Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g86 . . . . . . . . . Cmo11g01719 . . . . Sed01g2489 Cpe04g00571 . Bhi05g01757 Tan02g2062 Cmetu03g2203 . Hepe02g0449 . . Cla02g00452 Cam02g0460 Cec02g0459 Cco02g0478 Clacu02g0461 . Cre02g0790 . . . Cone10ag1188 . Csa07g00073 . . Blo04g00549 . . Bda14g00597 Bpe15g00831 . Bma03g00589 . . . . Cma11g01402 . . . . . . . . . . . . . . . . . . . Lsi11g01174 . Chy01g00703 .
Vvi3g87 . . . . . Bpe12g00107 . . Cmo19g00730 Cmo11g01720 . . . . Sed05g2209 Cpe04g00572 Cpe15g00575 Bhi05g01756 Tan02g0717 Cmetu01g0309 . Hepe02g0448 . . Cla02g00451 Cam02g0459 Cec02g0458 Cco02g0477 Clacu02g0460 Cmu02g0455 Cre02g0789 . . . Cone10ag1188 . Csa07g00074 . Cme01g01289 Blo04g00550 Blo13g00527 Bda15g01048 Bda14g00598 Bpe15g00830 . . Bma08g00767 . . . Cma11g01401 Cma19g00720 . Car19g00548 . . . . . . . . . . . . . . . . Lsi11g01175 . Chy01g00702 .
Vvi3g88 . Blo15g00657 . . . . . . . . . Cma20g00773 . Car20g00676 . . . . . . . . . . . . . . . . . . Cone8ag1256 . Cone10ag1186 Lsi10g00459 . Chy11g00301 . . . . . . . . . Sed01g0227 . . . . . . . . Bhi10g01899 Tan05g1199 Cmetu11g1981 . Hepe08g0951 . . Cla02g01120 Cam02g1193 Cec02g1182 . Clacu02g1182 Cmu02g1142 . . Csa02g01348 . Cme11g00423
Vvi3g89 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g90 . . . . Bpe07g00491 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo20g00773 . . . . Cpe16g00292 . . . . . . . . . . . . . . . . . . .
Vvi3g91 . . Bda06g00512 . . . . Bma12g00957 . . . . . . . . . Bhi05g01752 . . . . . . . . . . . . . Cone12ag1205 Cone8ag1257 . Cone10ag1185 . . . Cme01g01287 . . Bda15g01047 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g92 . Blo15g00345 . . Bpe07g00746 Bpe12g00108 Bma05g00386 . . . . . . . . . . Bhi05g01751 . . . . . . . . . . . . . . . . . . Csa07g00077 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g93 . . . . . . . . Cmo19g00731 Cmo11g01721 . . . . . . . . . . . . . . . . . . . . . Cone12ag1206 Cone8ag1258 . . . . . . . . Bda15g01046 . . . Bma03g00590 . . . . Cma11g01400 Cma19g00722 . Car19g00549 . . . . . . . . . . . . . . . . Lsi11g01177 . Chy01g00700 .
Vvi3g94 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g95 . . . . . Bpe12g00109 . . . Cmo11g01722 . . . . . Cpe04g00573 Cpe15g00577 . . . . . . . Cla02g00450 Cam02g0458 Cec02g0457 Cco02g0476 Clacu02g0459 Cmu02g0454 Cre02g0788 . . . . . . . . Blo04g00551 Blo13g00525 Bda15g01045 . . . . Bma08g00766 . . . Cma11g01399 . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 247 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
6 7363540 7365999 + Bda023764.1 Bda06g00512 512
14 4540936 4541741 + Bda027351.1 Bda14g00597 597
14 4542702 4545327 + Bda027352.1 Bda14g00598 598
15 19492230 19493541 - Bda013033.1 Bda15g01045 1045
15 19494001 19497145 - Bda013034.1 Bda15g01046 1046
15 19498647 19500489 - Bda013035.1 Bda15g01047 1047
15 19508772 19511173 - Bda013036.2 Bda15g01048 1048
5 56119100 56123016 + XM_039033119.1 Bhi05g01751 1751
5 56119304 56123016 + XM_039033120.1 Bhi05g01752 1752
5 56171394 56174173 - XM_039030892.1 Bhi05g01756 1756
5 56181676 56184270 - XM_039031970.1 Bhi05g01757 1757
10 47672811 47675465 + XM_039046648.1 Bhi10g01899 1899
4 4757952 4765076 + BLOR13461 Blo04g00549 549
4 4765940 4768069 + BLOR13462 Blo04g00550 550
4 4768555 4771677 + BLOR13463 Blo04g00551 551
13 26825643 26833641 - BLOR05806 Blo13g00525 525
13 26883870 26886391 - BLOR05808 Blo13g00527 527
15 4346480 4357802 - BLOR06739 Blo15g00345 345
15 18671074 18681415 + BLOR07051 Blo15g00657 657
3 4909934 4911061 + Bma016881.1 Bma03g00589 589
3 4911824 4917350 + Bma016882.1 Bma03g00590 590
5 12166793 12173089 + Bma021211.1 Bma05g00386 386
8 44672067 44673291 - Bma028143.1 Bma08g00766 766
8 44705921 44707610 - Bma028145.1 Bma08g00767 767
12 41509154 41511404 + Bma030525 Bma12g00957 957
7 9366058 9366873 + Bpe021333.1 Bpe07g00491 491
7 13997688 14000367 + Bpe026079 Bpe07g00746 746
12 769961 772357 + Bpe005347.1 Bpe12g00107 107
12 775393 777147 + Bpe005348.1 Bpe12g00108 108
12 778428 783316 + Bpe005349.1 Bpe12g00109 109
15 18361075 18363006 - Bpe001755.1 Bpe15g00830 830
15 18364160 18364800 - Bpe001756.1 Bpe15g00831 831
2 5278845 5280649 + CaPI482276_02g004580.1 Cam02g0458 458
2 5282654 5285437 - CaPI482276_02g004590.1 Cam02g0459 459
2 5288556 5291168 - CaPI482276_02g004600.1 Cam02g0460 460
2 23647955 23650443 + CaPI482276_02g011930.1 Cam02g1193 1193
19 7064586 7068224 + Carg19371-RA Car19g00548 548
19 7069751 7075675 - Carg19368-RA Car19g00549 549
20 3804975 3806915 + Carg16197-RA Car20g00676 676
2 4302154 4303980 + CcPI632755_02g004760.1 Cco02g0476 476
2 4306027 4308815 - CcPI632755_02g004770.1 Cco02g0477 477
2 4312280 4315253 - CcPI632755_02g004780.1 Cco02g0478 478
2 4303262 4305082 + CePI673135_02g004570.1 Cec02g0457 457
2 4307153 4309948 - CePI673135_02g004580.1 Cec02g0458 458
2 4313398 4316018 - CePI673135_02g004590.1 Cec02g0459 459
2 27816193 27818806 + CePI673135_02g011820.1 Cec02g1182 1182
1 5127415 5130690 + Chy1G007000.1 Chy01g00700 700
1 5134120 5136370 - Chy1G007020.1 Chy01g00702 702
1 5145465 5149154 - Chy1G007030.1 Chy01g00703 703
11 2752983 2754420 + Chy11G188810.1 Chy11g00301 301
2 4161605 4163376 + ClG42_02g0045900.10 Clacu02g0459 459
2 4165413 4168196 - ClG42_02g0046000.10 Clacu02g0460 460
2 4171636 4173721 - ClG42_02g0046100.10 Clacu02g0461 461
2 23728701 23731334 + ClG42_02g0118200.10 Clacu02g1182 1182
2 4416486 4422986 + ClCG02G004360.1 Cla02g00450 450
2 4425509 4428548 - ClCG02G004370.2 Cla02g00451 451
2 4431488 4433830 - ClCG02G004380.2 Cla02g00452 452
2 23970895 23973528 + ClCG02G011460.1 Cla02g01120 1120
11 9203077 9204250 - CmaCh11G013990.1 Cma11g01399 1399
11 9204575 9209173 - CmaCh11G014000.1 Cma11g01400 1400
11 9211337 9214680 - CmaCh11G014010.1 Cma11g01401 1401
11 9216280 9218124 - CmaCh11G014020.1 Cma11g01402 1402
19 7298133 7302237 + CmaCh19G007200.1 Cma19g00720 720
19 7305160 7309540 - CmaCh19G007220.1 Cma19g00722 722
20 3659244 3661371 + CmaCh20G007730.1 Cma20g00773 773
1 16218110 16222224 + MELO3C029039.2.1 Cme01g01287 1287
1 16240204 16243638 - MELO3C013383.2.1 Cme01g01289 1289
11 4253427 4254242 + MELO3C020774.2.1 Cme11g00423 423
1 5459134 5462399 - PI0007304.1 Cmetu01g0309 309
3 2325573 2332539 + PI0029101.1 Cmetu03g2203 2203
11 28204236 28207352 - PI0021855.1 Cmetu11g1981 1981
11 12181350 12183132 + CmoCh11G017190.1 Cmo11g01719 1719
11 12185045 12188426 + CmoCh11G017200.1 Cmo11g01720 1720
11 12190758 12195292 + CmoCh11G017210.1 Cmo11g01721 1721
11 12195453 12196964 + CmoCh11G017220.1 Cmo11g01722 1722
19 7553062 7558130 + CmoCh19G007300.1 Cmo19g00730 730
19 7559345 7565202 - CmoCh19G007310.1 Cmo19g00731 731
20 3870348 3880462 + CmoCh20G007730.1 Cmo20g00773 773
2 4157614 4159392 + CmPI595203_02g004540.1 Cmu02g0454 454
2 4161432 4164215 - CmPI595203_02g004550.1 Cmu02g0455 455
2 23593125 23595757 + CmPI595203_02g011420.1 Cmu02g1142 1142
8 10464840 10465805 - Conep08aG0129400.1 Cone8ag1256 1256
8 10467864 10469236 + Conep08aG0129500.1 Cone8ag1257 1257
8 10469660 10472073 + Conep08aG0129600.1 Cone8ag1258 1258
10 8741514 8743268 - Conep10aG0122000.1 Cone10ag1185 1185
10 8748142 8750021 + Conep10aG0122100.1 Cone10ag1186 1186
10 8760177 8764251 - Conep10aG0122300.1 Cone10ag1188 1188
12 9440526 9441982 + Conep12aG0124500.1 Cone12ag1205 1205
12 9442239 9444593 + Conep12aG0124600.1 Cone12ag1206 1206
4 6149623 6152574 + Cp4.1LG04g05180.1 Cpe04g00571 571
4 6154408 6157878 + Cp4.1LG04g05190.1 Cpe04g00572 572
4 6160081 6166870 + Cp4.1LG04g05170.1 Cpe04g00573 573
15 6595686 6600058 + Cp4.1LG15g05760.1 Cpe15g00575 575
15 6601486 6607796 - Cp4.1LG15g05800.1 Cpe15g00577 577
16 4908103 4910585 - Cp4.1LG16g02880.1 Cpe16g00292 292
2 4733151 4734975 + CrPI670011_02g007880.1 Cre02g0788 788
2 4736989 4739783 - CrPI670011_02g007890.1 Cre02g0789 789
2 4743125 4745829 - CrPI670011_02g007900.1 Cre02g0790 790
2 12986776 12988184 - CsaV3_2G015640.1 Csa02g01348 1348
7 734114 735854 + CsaV3_7G000730.1 Csa07g00073 73
7 739544 742853 + CsaV3_7G000740.1 Csa07g00074 74
7 752506 756602 - CsaV3_7G000770.1 Csa07g00077 77
2 4301509 4310579 - Hsped.02g04480.1 Hepe02g0448 448
2 4313955 4316887 - Hsped.02g04490.1 Hepe02g0449 449
8 8790315 8791106 + Hsped.08g09510.1 Hepe08g0951 951
10 6669279 6671609 - Lsi10G004590.1 Lsi10g00459 459
11 20240176 20243181 + Lsi11G011740.1 Lsi11g01174 1174
11 20248278 20251645 + Lsi11G011750.1 Lsi11g01175 1175
11 20255572 20259474 - Lsi11G011770.1 Lsi11g01177 1177
1 1798555 1801445 + Sed0018107.1 Sed01g0227 227
1 18616748 18620563 + Sed0003458.1 Sed01g2489 2489
5 34876336 34879724 + Sed0015502.2 Sed05g2209 2209
2 6681964 6685267 - Tan0017190.1 Tan02g0717 717
2 90094186 90100348 + Tan0015538.2 Tan02g2062 2062
5 11863147 11866305 + Tan0008936.1 Tan05g1199 1199
3 967526 969830 + Vvi3g86 Vvi3g86 86
3 971254 975625 + Vvi3g87 Vvi3g87 87
3 976130 977121 - Vvi3g88 Vvi3g88 88
3 978957 981975 + Vvi3g89 Vvi3g89 89
3 984043 985542 - Vvi3g90 Vvi3g90 90
3 991430 993320 + Vvi3g91 Vvi3g91 91
3 993328 994100 + Vvi3g92 Vvi3g92 92
3 996181 1004685 + Vvi3g93 Vvi3g93 93
3 1004685 1005093 + Vvi3g94 Vvi3g94 94
3 1006319 1007936 + Vvi3g95 Vvi3g95 95
       

DecoBrowse