Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g576 Blo04g00777 Blo16g00182 . . . Bpe13g00298 Bma06g00168 . Cmo13g01200 . . . . . . Cpe20g00011 . . . . . . . . . . . . . . . Cone2ag0833 Cone16ag0181 . . . Csa01g00566 Chy12g01528 Cme12g01976 . . Bda11g01705 Bda14g00858 . Bpe15g00597 Bma03g00837 . Sed08g2085 . . Cma13g01146 . Car13g00975 . . . Bhi08g01141 Tan05g2423 Cmetu12g1896 Lac10g0094 Hepe07g2496 . . Cla04g01185 Cam04g1241 Cec01g1753 Cco01g1799 Clacu04g1270 Cmu04g1249 Cre01g1542 . . . .
Vvi17g577 . . . . Bpe12g00538 . Bma06g00083 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0063 . . . . . . . . Bpe07g00772 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g578 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0061 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g579 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g580 Blo04g00778 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00087 . Chy12g01527 . . . . . . Bpe15g00596 . . . . . . . . . . . Bhi08g01140 . . . Hepe07g2495 . . . . . . . . . . . . .
Vvi17g581 . . Bda06g00537 . . . . . . . Cma10g00204 Cma11g00131 Car10g00193 Car11g00165 Sed08g0233 . Cpe04g01486 Bhi02g00300 Tan09g2098 Cmetu02g0126 . Hepe09g0103 . . Cla06g01577 Cam06g1745 Cec06g1803 Cco06g1805 Clacu06g1711 Cmu06g1655 Cre06g2468 . . . . . . . . . Blo15g00320 . . . . . . . Cmo10g00221 Cmo11g00181 . . . . . Cpe18g00783 . . . . . . . . . . . . . . Lsi06g01450 Csa01g00252 Chy02g02482 Cme02g01868
Vvi17g582 . . . . . . . . Cmo13g01203 . . . . . . Cpe20g00010 . . . . . . . . . . . . . . . Cone2ag0830 . . . . Csa01g00568 . . . . . . . . . . . . . . . Car13g00976 . . . . . . . . . . . . . . . . . . . . .
Vvi17g583 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g584 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g585 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 2023 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
6 7660840 7665989 + Bda033764 Bda06g00537 537
11 51292552 51297155 + Bda033162 Bda11g01705 1705
14 6601468 6604283 + Bda027632.1 Bda14g00858 858
2 5649703 5653588 - XM_039024222.1 Bhi02g00300 300
8 36021307 36023242 - XM_039039475.1 Bhi08g01140 1140
8 36054666 36058540 - XM_039039807.1 Bhi08g01141 1141
4 7687555 7690323 + BLOR13689 Blo04g00777 777
4 7691194 7692846 + BLOR13690 Blo04g00778 778
15 3690420 3694361 - BLOR06714 Blo15g00320 320
16 4053460 4056960 - BLOR07430 Blo16g00182 182
3 7945585 7948390 + Bma017152.1 Bma03g00837 837
6 1321675 1323308 + Bma022701.1 Bma06g00083 83
6 2158304 2161654 - Bma022783.2 Bma06g00168 168
7 14216080 14217441 - Bpe021617.1 Bpe07g00772 772
12 11251860 11253962 - Bpe005804.1 Bpe12g00538 538
13 10821873 10825160 + Bpe006424.1 Bpe13g00298 298
15 16889431 16891083 - Bpe001530.1 Bpe15g00596 596
15 16892547 16895339 - Bpe001531.1 Bpe15g00597 597
4 26427308 26430591 - CaPI482276_04g012410.1 Cam04g1241 1241
6 28707517 28711343 - CaPI482276_06g017450.1 Cam06g1745 1745
10 919187 922349 + Carg17951-RA Car10g00193 193
11 905349 908705 + Carg18202-RA Car11g00165 165
13 9731786 9734639 + Carg04696-RA Car13g00975 975
13 9736380 9740692 + Carg04695-RA Car13g00976 976
1 30681500 30684778 - CcPI632755_01g017990.1 Cco01g1799 1799
6 28411645 28416547 - CcPI632755_06g018050.1 Cco06g1805 1805
1 32105798 32109066 - CePI673135_01g017530.1 Cec01g1753 1753
6 31493399 31497234 - CePI673135_06g018030.1 Cec06g1803 1803
2 28364360 28367334 - Chy2G047490.1 Chy02g02482 2482
12 19025878 19027545 - Chy12G221270.1 Chy12g01527 1527
12 19028039 19031151 - Chy12G221280.1 Chy12g01528 1528
4 26783106 26788596 - ClG42_04g0127000.10 Clacu04g1270 1270
6 27766259 27770056 - ClG42_06g0171100.10 Clacu06g1711 1711
4 27026449 27030318 - ClCG04G012110.1 Cla04g01185 1185
6 29325419 29330460 - ClCG06G016030.2 Cla06g01577 1577
10 906965 910541 + CmaCh10G002040.1 Cma10g00204 204
11 701417 711320 - CmaCh11G001310.1 Cma11g00131 131
13 8431403 8443034 + CmaCh13G011460.1 Cma13g01146 1146
2 25293701 25297062 - MELO3C017188.2.1 Cme02g01868 1868
12 25568599 25572397 - MELO3C001998.2.1 Cme12g01976 1976
2 23615612 23619381 - PI0023265.1 Cmetu02g0126 126
12 549303 553287 + PI0010701.1 Cmetu12g1896 1896
10 967047 970375 + CmoCh10G002210.1 Cmo10g00221 221
11 873669 877440 + CmoCh11G001810.1 Cmo11g00181 181
13 9449487 9452333 + CmoCh13G012000.1 Cmo13g01200 1200
13 9454384 9457908 + CmoCh13G012030.1 Cmo13g01203 1203
4 26964978 26968223 - CmPI595203_04g012490.1 Cmu04g1249 1249
6 27674832 27678629 - CmPI595203_06g016550.1 Cmu06g1655 1655
2 34314094 34318903 - Conep02aG0185800.1 Cone2ag0830 830
2 34348449 34351874 - Conep02aG0186100.1 Cone2ag0833 833
13 368591 370961 + Conep13aG0006400.1 Cone13ag0061 61
16 1170950 1174484 + Conep16aG0018500.1 Cone16ag0181 181
19 390709 393385 + Conep19aG0006700.1 Cone19ag0063 63
4 11803873 11807940 - Cp4.1LG04g14990.1 Cpe04g01486 1486
18 7423723 7427137 - Cp4.1LG18g07990.1 Cpe18g00783 783
20 65704 69904 - Cp4.1LG20g00330.1 Cpe20g00010 10
20 71554 75983 - Cp4.1LG20g00300.1 Cpe20g00011 11
1 28627785 28631090 - CrPI670011_01g015420.1 Cre01g1542 1542
6 32470205 32474034 - CrPI670011_06g024680.1 Cre06g2468 2468
1 1577147 1580134 + CsaV3_1G002520.1 Csa01g00252 252
1 3651767 3655586 + CsaV3_1G005660.1 Csa01g00566 566
1 3658056 3662728 + CsaV3_1G005680.1 Csa01g00568 568
7 69304927 69307498 - Hsped.07g24950.1 Hepe07g2495 2495
7 69310560 69314730 - Hsped.07g24960.1 Hepe07g2496 2496
9 829384 832995 - Hsped.09g01030.1 Hepe09g0103 103
10 733219 736057 + Lag0024139.1 Lac10g0094 94
2 724451 733153 + Lsi02G000870.1 Lsi02g00087 87
6 25057733 25063712 - Lsi06G014500.1 Lsi06g01450 1450
8 1335962 1339961 + Sed0016998.1 Sed08g0233 233
8 34998118 35002137 + Sed0004299.2 Sed08g2085 2085
5 75403359 75407337 - Tan0014817.1 Tan05g2423 2423
9 71353904 71358052 - Tan0020609.2 Tan09g2098 2098
17 7037837 7044974 + Vvi17g576 Vvi17g576 576
17 7045792 7050331 - Vvi17g577 Vvi17g577 577
17 7050695 7055235 - Vvi17g578 Vvi17g578 578
17 7056645 7057026 - Vvi17g579 Vvi17g579 579
17 7058123 7059527 + Vvi17g580 Vvi17g580 580
17 7060725 7066945 + Vvi17g581 Vvi17g581 581
17 7067453 7068643 + Vvi17g582 Vvi17g582 582
17 7071257 7071532 + Vvi17g583 Vvi17g583 583
17 7072739 7094410 + Vvi17g584 Vvi17g584 584
17 7094554 7095620 - Vvi17g585 Vvi17g585 585
       

DecoBrowse