Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g292 . . . . . . . . . . . . . Car15g01210 . . . . . . . . . . . . . . . . . Cone8ag0576 . . . . . . . . Blo19g00123 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g293 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g294 . . . . . . Bma07g01053 . . Cmo16g01132 Cma02g00967 Cma15g01345 Car02g00713 Car15g01212 . . Cpe05g00750 . . . . . . . . . . . . . . . . . . . Csa05g00134 Chy09g01360 . Blo03g00783 Blo19g00119 Bda07g00168 Bda09g00622 Bpe08g00920 Bpe11g00386 . . . Cmo02g00973 Cmo15g01407 . . . . . . Bhi12g00051 . . Lac11g1820 . . Lcy12g1457 Cla01g00118 Cam01g0120 Cec01g0120 Cco01g0121 Clacu01g0117 Cmu01g0118 Cre09g2387 Lsi09g00106 . . Cme09g01906
Vvi2g295 . . . . . . Bma07g01057 Bma14g00083 . . Cma02g00968 . Car02g00714 Car15g01213 . . Cpe05g00749 . . . . . . . . . . . . . . Cone8ag0574 Cone12ag0576 . . . Csa05g00133 Chy09g01361 . Blo03g00780 Blo19g00112 Bda07g00172 Bda09g00619 Bpe08g00925 Bpe11g00387 . . . Cmo02g00974 . . . . . . . Bhi12g00050 . . Lac11g1817 Hepe06g1402 . Lcy12g1456 Cla01g00117 Cam01g0119 Cec01g0119 Cco01g0120 Clacu01g0116 Cmu01g0117 Cre09g2388 Lsi09g00105 . . Cme09g01907
Vvi2g296 . . . . . . . . . . Cma02g00969 Cma15g01346 Car02g00715 Car15g01214 . . Cpe05g00748 . . . . . . . . . . . . . . Cone8ag0572 Cone12ag0575 . . . Csa05g00132 Chy09g01362 . . . . . . . . . . Cmo02g00975 Cmo15g01408 Cma06g00453 . . . . . Bhi12g00049 . . Lac11g1813 . . . Cla01g00116 Cam01g0118 Cec01g0118 Cco01g0119 Clacu01g0115 Cmu01g0116 Cre09g2389 Lsi09g00104 . . Cme09g01908
Vvi2g297 . . . . . . . . . . Cma02g01430 . Car02g01198 . . . Cpe05g00356 . . . . . . . . . . . . . . Cone8ag0283 Cone12ag0289 Cone6ag0799 . . Csa05g00255 Chy09g01252 . . Blo19g00326 . . Bpe08g01495 . . . . Cmo02g01464 Cmo15g01311 . . . . . Cpe13g00139 Bhi12g00296 . . Lac11g2060 Hepe06g1520 . Lcy12g1624 Cla01g00238 Cam01g0244 Cec01g0237 Cco01g0251 Clacu01g0242 Cmu01g0233 Cre09g2276 Lsi09g00231 . . Cme09g01787
Vvi2g298 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g299 . . . . . . . . . . Cma02g00970 Cma15g01347 Car02g00716 Car15g01215 . . Cpe05g00747 . . . . . . . . . . . . . . . . . . . Csa05g00131 Chy09g01363 . . . . . . . . . . Cmo02g00976 Cmo15g01410 . . . . . . Bhi12g00045 . . . . . Lcy12g1449 Cla01g00115 . . . . . . Lsi09g00103 . . Cme09g01910
Vvi2g300 . . . Bda08g00383 . . Bma07g01058 . . . Cma02g00971 Cma15g01348 Car02g00717 Car15g01216 . . Cpe05g00746 . . . . . . . . . . . . . . Cone8ag0521 . . . . Csa05g00129 Chy09g01364 . Blo03g00779 Blo19g00111 Bda07g00175 Bda09g00618 Bpe08g00926 . . . . Cmo02g00977 Cmo15g01411 . . . . . . Bhi12g00044 . . . . . . Cla01g00114 Cam01g0115 Cec01g0116 Cco01g0117 Clacu01g0113 Cmu01g0114 Cre09g2392 Lsi09g00102 . . Cme09g01911
Vvi2g301 . . . . . . Bma07g01667 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00268 . . . . . Bda09g00030 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 170 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
7 2060276 2061446 + Bda025237.1 Bda07g00168 168
7 2096981 2105803 + Bda025242.2 Bda07g00172 172
7 2155047 2158039 + Bda025245.1 Bda07g00175 175
8 3967019 3967962 - Bda024826.1 Bda08g00383 383
9 442796 449563 - Bda034071 Bda09g00030 30
9 8973448 8976653 - Bda031243.1 Bda09g00618 618
9 8981457 8997871 - Bda034113 Bda09g00619 619
9 9112895 9114598 - Bda031249.1 Bda09g00622 622
12 874822 880752 + XM_039050894.1 Bhi12g00044 44
12 939130 941170 - XM_039050752.1 Bhi12g00045 45
12 1024768 1028174 + XM_039018611.1 Bhi12g00049 49
12 1082069 1093439 - XM_039018641.1 Bhi12g00050 50
12 1191274 1195653 - XM_039019784.1 Bhi12g00051 51
12 8603295 8606441 - XM_039020301.1 Bhi12g00296 296
3 32479753 32482965 - BLOR11960 Blo03g00779 779
3 32489020 32495653 - BLOR11961 Blo03g00780 780
3 32673609 32676003 - BLOR11964 Blo03g00783 783
19 3011372 3015348 - BLOR09454 Blo19g00111 111
19 3048293 3057970 - BLOR09455 Blo19g00112 112
19 3402907 3405631 - BLOR09462 Blo19g00119 119
19 3494637 3499068 + BLOR09466 Blo19g00123 123
19 21471975 21474234 + BLOR09669 Blo19g00326 326
7 42268330 42270980 + Bma031396 Bma07g01053 1053
7 42601496 42612253 + Bma026253.2 Bma07g01057 1057
7 42617601 42620214 + Bma026254.1 Bma07g01058 1058
7 52253858 52260022 + Bma026964.1 Bma07g01667 1667
14 1176087 1180214 - Bma010488.2 Bma14g00083 83
8 11641499 11644170 + Bpe023043.3 Bpe08g00920 920
8 11687251 11697364 + Bpe023048.1 Bpe08g00925 925
8 11702158 11704911 + Bpe023049.1 Bpe08g00926 926
8 15641306 15643482 + Bpe023607.1 Bpe08g01495 1495
11 2929960 2932353 + Bpe003760.3 Bpe11g00386 386
11 2940289 2944408 + Bpe003761.1 Bpe11g00387 387
1 1427671 1431762 + CaPI482276_01g001150.1 Cam01g0115 115
1 1458956 1461277 + CaPI482276_01g001180.1 Cam01g0118 118
1 1475975 1484861 - CaPI482276_01g001190.1 Cam01g0119 119
1 1490691 1493319 - CaPI482276_01g001200.1 Cam01g0120 120
1 2737332 2740075 + CaPI482276_01g002440.1 Cam01g0244 244
2 5296317 5299838 + Carg08510-RA Car02g00713 713
2 5301693 5309305 + Carg08509-RA Car02g00714 714
2 5313359 5316414 - Carg08508-RA Car02g00715 715
2 5323192 5324663 + Carg08507-RA Car02g00716 716
2 5325534 5328682 - Carg08506-RA Car02g00717 717
2 8151851 8154020 + Carg02550-RA Car02g01198 1198
15 9446730 9448779 + Carg20797-RA Car15g01210 1210
15 9458784 9461044 + Carg20799-RA Car15g01212 1212
15 9462566 9469598 + Carg20800-RA Car15g01213 1213
15 9473753 9476573 - Carg20801-RA Car15g01214 1214
15 9487865 9489624 + Carg20802-RA Car15g01215 1215
15 9490964 9491797 - Carg20803-RA Car15g01216 1216
1 963760 967178 + CcPI632755_01g001170.1 Cco01g0117 117
1 1002593 1004914 + CcPI632755_01g001190.1 Cco01g0119 119
1 1020006 1028751 - CcPI632755_01g001200.1 Cco01g0120 120
1 1034563 1037185 - CcPI632755_01g001210.1 Cco01g0121 121
1 2361424 2364160 + CcPI632755_01g002510.1 Cco01g0251 251
1 998441 1001989 + CePI673135_01g001160.1 Cec01g0116 116
1 1029304 1031614 + CePI673135_01g001180.1 Cec01g0118 118
1 1046681 1055603 - CePI673135_01g001190.1 Cec01g0119 119
1 1061575 1064200 - CePI673135_01g001200.1 Cec01g0120 120
1 2340417 2343152 + CePI673135_01g002370.1 Cec01g0237 237
9 14562600 14565666 - Chy9G169680.1 Chy09g01252 1252
9 15442635 15445349 + Chy9G170760.1 Chy09g01360 1360
9 15447047 15453247 + Chy9G170770.1 Chy09g01361 1361
9 15463264 15465375 - Chy9G170780.1 Chy09g01362 1362
9 15480181 15481572 + Chy9G170790.1 Chy09g01363 1363
9 15482715 15485164 - Chy9G170800.1 Chy09g01364 1364
1 1038271 1041821 + ClG42_01g0011300.10 Clacu01g0113 113
1 1069005 1071343 + ClG42_01g0011500.10 Clacu01g0115 115
1 1085959 1094807 - ClG42_01g0011600.10 Clacu01g0116 116
1 1100559 1103288 - ClG42_01g0011700.10 Clacu01g0117 117
1 2354236 2356933 + ClG42_01g0024200.10 Clacu01g0242 242
1 1000302 1014547 + ClCG01G001170.2 Cla01g00114 114
1 1015685 1017319 - ClCG01G001180.1 Cla01g00115 115
1 1043610 1045949 + ClCG01G001200.1 Cla01g00116 116
1 1061840 1071228 - ClCG01G001210.1 Cla01g00117 117
1 1076679 1080825 - ClCG01G001220.1 Cla01g00118 118
1 2393991 2397901 + ClCG01G002440.1 Cla01g00238 238
2 5767672 5773725 + CmaCh02G009670.1 Cma02g00967 967
2 5773819 5781842 + CmaCh02G009680.1 Cma02g00968 968
2 5785720 5788970 - CmaCh02G009690.1 Cma02g00969 969
2 5800532 5802400 + CmaCh02G009700.1 Cma02g00970 970
2 5803306 5806274 - CmaCh02G009710.1 Cma02g00971 971
2 8243896 8246382 + CmaCh02G014300.1 Cma02g01430 1430
6 2095169 2098566 - CmaCh06G004530.1 Cma06g00453 453
15 8438088 8449235 + CmaCh15G013450.1 Cma15g01345 1345
15 8453337 8457364 - CmaCh15G013460.1 Cma15g01346 1346
15 8466818 8469101 + CmaCh15G013470.1 Cma15g01347 1347
15 8469875 8471653 - CmaCh15G013480.1 Cma15g01348 1348
9 22309126 22312361 - MELO3C005701.2.1 Cme09g01787 1787
9 23203962 23208291 + MELO3C005813.2.1 Cme09g01906 1906
9 23209521 23216096 + MELO3C005814.2.1 Cme09g01907 1907
9 23225738 23228220 - MELO3C005815.2.1 Cme09g01908 1908
9 23244048 23246095 + MELO3C005816.2.1 Cme09g01910 1910
9 23246649 23250060 - MELO3C005817.2.1 Cme09g01911 1911
2 5990985 5995198 + CmoCh02G009730.1 Cmo02g00973 973
2 5996878 6006036 + CmoCh02G009740.1 Cmo02g00974 974
2 6010106 6013631 - CmoCh02G009750.1 Cmo02g00975 975
2 6020389 6021932 + CmoCh02G009760.1 Cmo02g00976 976
2 6022903 6025992 - CmoCh02G009770.1 Cmo02g00977 977
2 8603746 8606933 + CmoCh02G014640.1 Cmo02g01464 1464
15 9009345 9013734 - CmoCh15G013110.1 Cmo15g01311 1311
15 9580631 9593389 + CmoCh15G014070.1 Cmo15g01407 1407
15 9597606 9600581 - CmoCh15G014080.1 Cmo15g01408 1408
15 9612513 9614500 + CmoCh15G014100.1 Cmo15g01410 1410
15 9615452 9620479 - CmoCh15G014110.1 Cmo15g01411 1411
16 8073503 8077880 - CmoCh16G011320.1 Cmo16g01132 1132
1 983076 986629 + CmPI595203_01g001140.1 Cmu01g0114 114
1 1013809 1016145 + CmPI595203_01g001160.1 Cmu01g0116 116
1 1030768 1039614 - CmPI595203_01g001170.1 Cmu01g0117 117
1 1045367 1047991 - CmPI595203_01g001180.1 Cmu01g0118 118
1 2307275 2309972 + CmPI595203_01g002330.1 Cmu01g0233 233
6 4062711 4065278 - Conep06aG0082300.1 Cone6ag0799 799
8 1631346 1634657 + Conep08aG0029800.1 Cone8ag0283 283
8 3729290 3734168 + Conep08aG0054200.1 Cone8ag0521 521
8 4557630 4561688 + Conep08aG0059300.1 Cone8ag0572 572
8 4581623 4599222 + Conep08aG0059500.1 Cone8ag0574 574
8 4632783 4633706 + Conep08aG0059700.1 Cone8ag0576 576
12 1557580 1562967 + Conep12aG0030100.1 Cone12ag0289 289
12 4259062 4263005 + Conep12aG0059600.1 Cone12ag0575 575
12 4276350 4284874 - Conep12aG0059700.1 Cone12ag0576 576
5 1985697 1989735 - Cp4.1LG05g03160.1 Cpe05g00356 356
5 4577185 4580348 + Cp4.1LG05g07410.1 Cpe05g00746 746
5 4581358 4582854 - Cp4.1LG05g07500.1 Cpe05g00747 747
5 4588907 4592538 + Cp4.1LG05g07390.1 Cpe05g00748 748
5 4594697 4603869 - Cp4.1LG05g07480.1 Cpe05g00749 749
5 4606300 4609032 - Cp4.1LG05g07490.1 Cpe05g00750 750
13 1002694 1006074 + Cp4.1LG13g01420.1 Cpe13g00139 139
9 41979808 41982554 - CrPI670011_09g022760.1 Cre09g2276 2276
9 43253003 43255728 + CrPI670011_09g023870.1 Cre09g2387 2387
9 43261490 43270445 + CrPI670011_09g023880.1 Cre09g2388 2388
9 43285516 43287841 - CrPI670011_09g023890.1 Cre09g2389 2389
9 43321484 43326515 - CrPI670011_09g023920.1 Cre09g2392 2392
5 660752 665570 + CsaV3_5G001290.1 Csa05g00129 129
5 671247 673599 - CsaV3_5G001310.1 Csa05g00131 131
5 686982 690557 + CsaV3_5G001320.1 Csa05g00132 132
5 699400 706214 - CsaV3_5G001330.1 Csa05g00133 133
5 707223 712354 - CsaV3_5G001340.1 Csa05g00134 134
5 1543743 1547597 + CsaV3_5G002550.1 Csa05g00255 255
5 1650582 1654802 + CsaV3_5G002680.1 Csa05g00268 268
6 64288601 64305706 - Hsped.06g14020.1 Hepe06g1402 1402
6 65855512 65859319 + Hsped.06g15200.1 Hepe06g1520 1520
11 32745947 32748728 + Lag0032451.1 Lac11g1813 1813
11 32818639 32836066 - Lag0032455.1 Lac11g1817 1817
11 32884584 32888806 - Lag0032458.1 Lac11g1820 1820
11 36412012 36414535 + Lag0032698.1 Lac11g2060 2060
12 33002333 33003972 - Maker00029227 Lcy12g1449 1449
12 33247257 33247682 - Maker00029204 Lcy12g1456 1456
12 33288180 33293296 - Maker00029344 Lcy12g1457 1457
12 36528097 36531414 + Maker00029342 Lcy12g1624 1624
9 909810 913100 + Lsi09G001020.1 Lsi09g00102 102
9 913934 915867 - Lsi09G001030.1 Lsi09g00103 103
9 941739 945173 + Lsi09G001040.1 Lsi09g00104 104
9 957085 965535 - Lsi09G001050.1 Lsi09g00105 105
9 969271 973611 - Lsi09G001060.1 Lsi09g00106 106
9 2400061 2403577 + Lsi09G002310.1 Lsi09g00231 231
2 2708195 2718224 + Vvi2g292 Vvi2g292 292
2 2719890 2720712 - Vvi2g293 Vvi2g293 293
2 2722723 2725052 + Vvi2g294 Vvi2g294 294
2 2727565 2744486 + Vvi2g295 Vvi2g295 295
2 2746468 2750881 - Vvi2g296 Vvi2g296 296
2 2766797 2767868 - Vvi2g297 Vvi2g297 297
2 2767980 2771510 + Vvi2g298 Vvi2g298 298
2 2774653 2783052 + Vvi2g299 Vvi2g299 299
2 2788378 2791515 + Vvi2g300 Vvi2g300 300
2 2793847 2803836 + Vvi2g301 Vvi2g301 301
       

DecoBrowse