Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g716 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g00976 Cam10g0999 Cec10g1029 Cco10g0992 Clacu10g1020 Cmu10g1803 Cre10g1177 . . . . . . . . . . . . . . . . . Cmo04g00475 . . . . Car19g00407 . Cpe01g00397 . . . . . . . . . . . . . . Lsi03g01015 . . Cme07g02196
Vvi3g717 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g718 . . . Bda08g00681 . . . . Cmo19g00562 Cmo11g01421 . . . . . Cpe04g00328 Cpe15g00435 . . . . . . . Cla02g00686 Cam02g0719 Cec02g0732 Cco02g0754 Clacu02g0729 Cmu02g0727 Cre02g1038 . Cone8ag1075 . Cone10ag1049 Lsi03g00582 Csa07g00680 . Cme01g00124 . . . . . . . . . . . Cma11g01699 Cma19g00548 Car11g01144 Car19g00406 . . . . . . . . . . . . . . . . . . Chy01g00134 .
Vvi3g719 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g720 . . . . . . . . Cmo19g00561 Cmo11g01422 . . . . Sed10g1170 Cpe04g00329 Cpe15g00434 Bhi05g01027 Tan02g1724 Cmetu03g1320 Lac12g0158 . . . Cla02g00689 Cam02g0721 Cec02g0735 Cco02g0757 Clacu02g0733 Cmu02g0729 Cre02g1040 . . . . Lsi03g00583 Csa07g00679 . Cme01g00126 . . . . . . . . . . . Cma11g01697 Cma19g00547 Car11g01146 Car19g00404 . . . . . . . . . . . . . . . . . . Chy01g00135 .
Vvi3g721 . . . . . . . . Cmo19g00558 . . . . . . . Cpe15g00433 Bhi05g01026 . . . . . . Cla02g00690 Cam02g0722 Cec02g0738 Cco02g0760 Clacu02g0734 Cmu02g0730 Cre02g1041 . Cone8ag1074 . . Lsi03g00584 Csa07g00678 . Cme01g00127 . . . . . . . . . . . . Cma19g00545 . Car19g00403 . . . . . . . . . . . . . . . . . . Chy01g00136 .
Vvi3g722 . Blo03g00069 Bda06g01187 . Bpe07g00280 . . Bma12g00288 . . . . . . . . . . . . . . . . Cla10g00975 Cam10g0998 Cec10g1028 Cco10g0991 Clacu10g1019 Cmu10g1802 Cre10g1176 . . Cone8ag0167 Cone12ag0173 . . . . . . . . . . . . . Cmo04g00473 Cmo16g00332 . . . . Cpe14g00260 Cpe01g00396 Bhi11g01125 . . . . . . . . . . . . . Lsi03g01014 . . Cme07g02198
Vvi3g723 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g724 . Blo03g00067 Bda06g01186 . Bpe07g00283 Bpe12g00735 . Bma12g00289 . . . . . . . . . . . . . . . . Cla10g00973 Cam10g0996 Cec10g1026 Cco10g0989 Clacu10g1017 Cmu10g1801 Cre10g1174 . Cone8ag1072 . . . . . . . Blo13g00277 . . . . . . Sed07g1254 Cmo04g00471 . . . . . . Cpe01g00394 Bhi11g01123 Tan01g0619 Cmetu07g1368 . Hepe07g0404 Mch10g0417 . . . . . . . . Lsi03g01012 . . Cme07g02201
Vvi3g725 Blo02g00926 Blo03g00066 . . Bpe07g00284 . Bma05g00646 . . . . . . . . . . . . . . . . . Cla10g00969 Cam10g0993 Cec10g1023 Cco10g0985 Clacu10g1013 Cmu10g1798 Cre10g1170 . . Cone3ag1037 Cone10ag1053 . . . . . . . . . Bpe05g00467 . . Sed06g1605 Cmo04g00470 Cmo16g00330 . . . . Cpe14g00259 Cpe01g00393 Bhi11g01121 Tan01g0618 Cmetu10g0407 . Hepe07g0403 Mch10g0416 . . . . . . . . Lsi03g01011 . . Cme07g02202
   
Previous Page 310 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
6 41537818 41543263 - Bda023002.1 Bda06g01186 1186
6 41558356 41560438 + Bda023003.2 Bda06g01187 1187
8 7235434 7237451 - Bda029137.1 Bda08g00681 681
5 36512214 36527379 + XM_039030987.1 Bhi05g01026 1026
5 36529986 36531911 - XM_039032832.1 Bhi05g01027 1027
11 32717102 32720105 - XM_039047782.1 Bhi11g01121 1121
11 32739299 32746275 - XM_039047671.1 Bhi11g01123 1123
11 32919601 32927793 + XM_039049920.1 Bhi11g01125 1125
2 35829197 35830662 + BLOR10656 Blo02g00926 926
3 2436702 2438052 - BLOR11247 Blo03g00066 66
3 2445766 2450889 - BLOR11248 Blo03g00067 67
3 2505086 2507277 - BLOR11250 Blo03g00069 69
13 14245215 14253794 + BLOR05558 Blo13g00277 277
5 37998883 38000270 + Bma021687.2 Bma05g00646 646
12 3843475 3845618 - Bma007186.2 Bma12g00288 288
12 3857481 3862785 + Bma007187.1 Bma12g00289 289
5 18996730 18998192 + Bpe017887.2 Bpe05g00467 467
7 2001529 2003662 - Bpe021090.3 Bpe07g00280 280
7 2034501 2039983 + Bpe021092.1 Bpe07g00283 283
7 2041057 2042157 + Bpe021093.1 Bpe07g00284 284
12 12876956 12883446 - Bpe005996.1 Bpe12g00735 735
2 8571947 8574484 + CaPI482276_02g007190.1 Cam02g0719 719
2 8651803 8653287 + CaPI482276_02g007210.1 Cam02g0721 721
2 8660686 8684120 - CaPI482276_02g007220.1 Cam02g0722 722
10 22102980 22106284 - CaPI482276_10g009930.1 Cam10g0993 993
10 22186711 22192611 - CaPI482276_10g009960.1 Cam10g0996 996
10 22231870 22238987 + CaPI482276_10g009980.1 Cam10g0998 998
10 22261945 22267531 - CaPI482276_10g009990.1 Cam10g0999 999
11 9182430 9184758 + Carg23038-RA Car11g01144 1144
11 9198161 9199189 + Carg23040-RA Car11g01146 1146
19 5921537 5929483 + Carg16324-RA Car19g00403 403
19 5929983 5932145 - Carg16325-RA Car19g00404 404
19 5939106 5943309 - Carg16327-RA Car19g00406 406
19 5943685 5951915 - Carg16328-RA Car19g00407 407
2 7878357 7880867 + CcPI632755_02g007540.1 Cco02g0754 754
2 7940032 7941556 + CcPI632755_02g007570.1 Cco02g0757 757
2 7962651 7984508 - CcPI632755_02g007600.1 Cco02g0760 760
10 21305569 21308823 - CcPI632755_10g009850.1 Cco10g0985 985
10 21401445 21407429 - CcPI632755_10g009890.1 Cco10g0989 989
10 21443006 21451683 + CcPI632755_10g009910.1 Cco10g0991 991
10 21474464 21480122 - CcPI632755_10g009920.1 Cco10g0992 992
2 7793947 7796484 + CePI673135_02g007320.1 Cec02g0732 732
2 7899554 7901081 + CePI673135_02g007350.1 Cec02g0735 735
2 7920098 7942944 - CePI673135_02g007380.1 Cec02g0738 738
10 22983748 22986956 - CePI673135_10g010230.1 Cec10g1023 1023
10 23062371 23068237 - CePI673135_10g010260.1 Cec10g1026 1026
10 23123587 23129612 + CePI673135_10g010280.1 Cec10g1028 1028
10 23152312 23157962 - CePI673135_10g010290.1 Cec10g1029 1029
1 897329 898699 + Chy1G001340.1 Chy01g00134 134
1 924492 926646 + Chy1G001350.1 Chy01g00135 135
1 928948 937408 - Chy1G001360.1 Chy01g00136 136
2 7587159 7589680 + ClG42_02g0072900.10 Clacu02g0729 729
2 7660532 7661967 + ClG42_02g0073300.10 Clacu02g0733 733
2 7669134 7691636 - ClG42_02g0073400.10 Clacu02g0734 734
10 21768793 21772098 - ClG42_10g0101300.10 Clacu10g1013 1013
10 21857805 21863676 - ClG42_10g0101700.10 Clacu10g1017 1017
10 21901626 21907651 + ClG42_10g0101900.10 Clacu10g1019 1019
10 21928744 21934347 - ClG42_10g0102000.10 Clacu10g1020 1020
2 7948071 7951655 + ClCG02G006870.1 Cla02g00686 686
2 8025267 8026702 + ClCG02G007060.1 Cla02g00689 689
2 8033480 8057238 - ClCG02G007070.1 Cla02g00690 690
10 22769980 22773643 - ClCG10G010100.1 Cla10g00969 969
10 22865451 22871716 - ClCG10G010130.2 Cla10g00973 973
10 22908811 22915315 + ClCG10G010150.2 Cla10g00975 975
10 22939815 22945907 - ClCG10G010240.2 Cla10g00976 976
11 11202373 11203769 - CmaCh11G016970.1 Cma11g01697 1697
11 11219384 11222487 - CmaCh11G016990.1 Cma11g01699 1699
19 6250150 6259928 + CmaCh19G005450.1 Cma19g00545 545
19 6261419 6262805 - CmaCh19G005470.1 Cma19g00547 547
19 6264184 6273646 - CmaCh19G005480.1 Cma19g00548 548
1 892374 895569 + MELO3C018523.2.1 Cme01g00124 124
1 911890 913489 + MELO3C018524.2.1 Cme01g00126 126
1 915033 923701 - MELO3C018525.2.1 Cme01g00127 127
7 26222780 26226095 + MELO3C018013.2.1 Cme07g02196 2196
7 26234995 26240103 - MELO3C018014.2.1 Cme07g02198 2198
7 26257535 26263861 + MELO3C018017.2.1 Cme07g02201 2201
7 26268922 26271734 + MELO3C018018.2.1 Cme07g02202 2202
3 964368 965958 - PI0009122.3 Cmetu03g1320 1320
7 343436 349994 - PI0002823.1 Cmetu07g1368 1368
10 18838249 18841702 - PI0024581.1 Cmetu10g0407 407
4 2345832 2347908 - CmoCh04G004700.1 Cmo04g00470 470
4 2348688 2355402 - CmoCh04G004710.1 Cmo04g00471 471
4 2362687 2367413 + CmoCh04G004730.1 Cmo04g00473 473
4 2374692 2377864 - CmoCh04G004750.1 Cmo04g00475 475
11 10001168 10004020 + CmoCh11G014210.1 Cmo11g01421 1421
11 10025478 10026504 + CmoCh11G014220.1 Cmo11g01422 1422
16 1507017 1509234 - CmoCh16G003300.1 Cmo16g00330 330
16 1518183 1524610 + CmoCh16G003320.1 Cmo16g00332 332
19 6419371 6429349 + CmoCh19G005580.1 Cmo19g00558 558
19 6430332 6433225 - CmoCh19G005610.1 Cmo19g00561 561
19 6441876 6445911 - CmoCh19G005620.1 Cmo19g00562 562
2 7495202 7498151 + CmPI595203_02g007270.1 Cmu02g0727 727
2 7568732 7570170 + CmPI595203_02g007290.1 Cmu02g0729 729
2 7577414 7606035 - CmPI595203_02g007300.1 Cmu02g0730 730
10 22379054 22382356 - CmPI595203_10g017980.1 Cmu10g1798 1798
10 22468064 22473934 - CmPI595203_10g018010.1 Cmu10g1801 1801
10 22511881 22517905 + CmPI595203_10g018020.1 Cmu10g1802 1802
10 22538959 22544561 - CmPI595203_10g018030.1 Cmu10g1803 1803
3 29188468 29190084 + Conep03aG0153800.1 Cone3ag1037 1037
8 853030 857148 - Conep08aG0016900.1 Cone8ag0167 167
8 9718414 9722328 - Conep08aG0110100.1 Cone8ag1072 1072
8 9726908 9731733 + Conep08aG0110300.1 Cone8ag1074 1074
8 9734803 9736528 - Conep08aG0110600.1 Cone8ag1075 1075
10 7310361 7312593 + Conep10aG0107600.1 Cone10ag1049 1049
10 7320857 7322893 + Conep10aG0108000.1 Cone10ag1053 1053
12 863163 866942 - Conep12aG0017600.1 Cone12ag0173 173
1 2279905 2282200 - Cp4.1LG01g02780.1 Cpe01g00393 393
1 2282921 2289612 - Cp4.1LG01g02750.1 Cpe01g00394 394
1 2296937 2302390 + Cp4.1LG01g02690.1 Cpe01g00396 396
1 2308688 2312061 - Cp4.1LG01g02580.1 Cpe01g00397 397
4 4024932 4028188 + Cp4.1LG04g07600.1 Cpe04g00328 328
4 4048868 4050209 + Cp4.1LG04g07610.1 Cpe04g00329 329
14 1489945 1492324 - Cp4.1LG14g04540.1 Cpe14g00259 259
14 1500414 1507626 + Cp4.1LG14g04610.1 Cpe14g00260 260
15 5469226 5479291 + Cp4.1LG15g04330.1 Cpe15g00433 433
15 5480174 5482002 - Cp4.1LG15g04410.1 Cpe15g00434 434
15 5490500 5493299 - Cp4.1LG15g04430.1 Cpe15g00435 435
2 8126951 8129479 + CrPI670011_02g010380.1 Cre02g1038 1038
2 8197623 8199121 + CrPI670011_02g010400.1 Cre02g1040 1040
2 8203152 8232637 - CrPI670011_02g010410.1 Cre02g1041 1041
10 24034506 24037808 - CrPI670011_10g011700.1 Cre10g1170 1170
10 24129900 24135817 - CrPI670011_10g011740.1 Cre10g1174 1174
10 24181699 24187719 + CrPI670011_10g011760.1 Cre10g1176 1176
10 24210719 24216324 - CrPI670011_10g011770.1 Cre10g1177 1177
7 4832401 4841445 + CsaV3_7G007770.1 Csa07g00678 678
7 4842980 4845207 - CsaV3_7G007780.1 Csa07g00679 679
7 4866539 4870408 - CsaV3_7G007790.1 Csa07g00680 680
7 4097261 4099659 - Hsped.07g04030.1 Hepe07g0403 403
7 4109855 4117398 - Hsped.07g04040.1 Hepe07g0404 404
12 1787513 1788556 - Lag0014530.1 Lac12g0158 158
3 7150640 7153980 + Lsi03G005820.1 Lsi03g00582 582
3 7247925 7249722 + Lsi03G005830.1 Lsi03g00583 583
3 7257354 7262234 - Lsi03G005840.1 Lsi03g00584 584
3 19453538 19456639 - Lsi03G010110.1 Lsi03g01011 1011
3 19467211 19473591 - Lsi03G010120.1 Lsi03g01012 1012
3 19524894 19531278 + Lsi03G010140.1 Lsi03g01014 1014
3 19554641 19558247 - Lsi03G010150.1 Lsi03g01015 1015
10 2749009 2750922 - MC10g0343 Mch10g0416 416
10 2755564 2761890 - MC10g0344 Mch10g0417 417
6 40862026 40867012 + Sed0020014.1 Sed06g1605 1605
7 9383107 9392488 - Sed0013642.1 Sed07g1254 1254
10 19044097 19045020 - Sed0003112.1 Sed10g1170 1170
1 5726517 5729834 - Tan0002837.1 Tan01g0618 618
1 5735382 5742274 - Tan0020824.1 Tan01g0619 619
2 80583141 80584098 - Tan0019241.1 Tan02g1724 1724
3 7441439 7444729 + Vvi3g716 Vvi3g716 716
3 7446507 7449614 - Vvi3g717 Vvi3g717 717
3 7469817 7484328 + Vvi3g718 Vvi3g718 718
3 7502148 7502253 - Vvi3g719 Vvi3g719 719
3 7535042 7536583 + Vvi3g720 Vvi3g720 720
3 7537269 7559624 - Vvi3g721 Vvi3g721 721
3 7563889 7582110 - Vvi3g722 Vvi3g722 722
3 7603309 7604412 - Vvi3g723 Vvi3g723 723
3 7652631 7661288 + Vvi3g724 Vvi3g724 724
3 7673856 7675758 + Vvi3g725 Vvi3g725 725
       

DecoBrowse