Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g741 . . . . . Bpe10g00832 . Bma15g00192 . Cmo18g00811 . Cma18g00809 . Car18g00740 . Cpe09g00496 Cpe01g01520 . . . . . . . Cla05g02528 Cam05g2718 Cec05g2749 Cco05g2790 Clacu05g2720 Cmu05g2574 Cre05g2688 Cone13ag1031 Cone19ag1022 . . Lsi04g00534 Csa05g02349 Chy10g00916 Cme10g00510 Blo06g00870 . . . . . . . . . . Cma04g01717 . Car04g01749 . . . . . . . . . . . . . . . . . . . . .
Vvi1g742 . . . Bda11g01259 Bpe13g01457 . . . . . . . . . . . . . . . . . . . Cla05g02527 Cam05g2716 Cec05g2748 Cco05g2788 Clacu05g2719 Cmu05g2573 Cre05g2687 Cone13ag1030 Cone19ag1021 . . . . . . . . . Bda11g01259 . . . Bma06g00624 . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g743 . Blo16g01154 . Bda11g01258 Bpe13g01456 . . . . . . . . . . . Cpe01g01519 . . . . . . . . . . . . . . . Cone19ag1020 Cone8ag0650 . Lsi04g00532 Csa05g02350 Chy10g00917 Cme10g00509 . . . Bda11g01258 . . Bma01g00056 Bma06g00625 . . . Cma04g01716 Cma05g00002 Car04g01748 Car05g00002 Cpe13g00909 . . . . . . . . . . . . . . . . . Chy09g00327 .
Vvi1g744 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g745 . . . . . Bpe10g00831 Bma14g01784 Bma15g00201 . . . . . . . . Cpe01g01518 . . . . . . . Cla05g02526 Cam05g2715 Cec05g2747 Cco05g2787 Clacu05g2718 Cmu05g2572 Cre05g2685 Cone13ag1029 Cone19ag1019 . . Lsi04g00531 Csa05g02351 Chy10g00918 Cme10g00508 Blo06g00869 Blo11g00904 Bda07g01593 . . . . . . . . Cma04g01714 . Car04g01747 . . . . . . . . . . . . . . . . . . . . .
Vvi1g746 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g747 . . . . . . . . . . . . . . . . . . . . . . . . Cla05g02525 Cam05g2712 Cec05g2744 Cco05g2784 Clacu05g2715 Cmu05g2569 Cre05g2682 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g748 . . . . . . Bma14g01783 Bma15g00193 . . . . . . . . Cpe01g01517 . . . . . . . . . . . . . . Cone13ag1027 Cone19ag1018 . Cone12ag0633 Lsi04g00530 Csa05g02352 Chy10g00919 Cme10g00507 Blo06g00868 Blo11g00903 Bda07g01592 . . . . . . . . Cma04g01713 . Car04g01746 . . . . . . . . . . . . . . . . . . . . .
Vvi1g749 Blo01g00400 Blo16g01153 Bda01g02227 Bda11g01257 Bpe13g01455 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01257 . . . Bma06g00626 . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g750 . . . . Bpe13g00490 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0649 . . . . . . . . . . . . . . Cmo04g02846 . . . . . Cpe13g00910 . . . . . . . . . . . . . . . . . Chy09g00326 .
   
Previous Page 75 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
1 58091049 58098242 + Bda004567.1 Bda01g02227 2227
7 29543658 29557480 - Bda033980 Bda07g01592 1592
7 29562641 29565644 - Bda028463.1 Bda07g01593 1593
11 13193050 13194481 + Bda007772.1 Bda11g01257 1257
11 13195711 13200298 - Bda007773.1 Bda11g01258 1258
11 13205261 13209125 - Bda007774.1 Bda11g01259 1259
1 4530688 4532420 + BLOR00400 Blo01g00400 400
6 31968381 31978504 - BLOR17451 Blo06g00868 868
6 31980583 31986789 - BLOR17452 Blo06g00869 869
6 32022009 32024174 + BLOR17453 Blo06g00870 870
11 18436124 18448584 - BLOR03779 Blo11g00903 903
11 18486430 18495684 - BLOR03780 Blo11g00904 904
16 40054977 40056573 + BLOR21940 Blo16g01153 1153
16 40057157 40074815 - BLOR21941 Blo16g01154 1154
1 588421 591751 + Bma000223.1 Bma01g00056 56
6 33376378 33379570 + Bma023569.1 Bma06g00624 624
6 33387765 33392556 + Bma023570.1 Bma06g00625 625
6 33393409 33394900 - Bma023571.2 Bma06g00626 626
14 38377313 38399279 - Bma030740 Bma14g01783 1783
14 38417190 38420156 - Bma012554.1 Bma14g01784 1784
15 1958015 1959922 - Bma013174.1 Bma15g00192 192
15 1966600 1982884 + Bma013175.3 Bma15g00193 193
15 2069839 2070912 + Bma013185.1 Bma15g00201 201
10 14308752 14323234 - Bpe003135.1 Bpe10g00831 831
10 14329364 14331226 + Bpe003136.1 Bpe10g00832 832
13 12314006 12320770 - Bpe010202.1 Bpe13g00490 490
13 19839059 19840563 + Bpe011120.1 Bpe13g01455 1455
13 19841422 19844023 - Bpe011121.1 Bpe13g01456 1456
13 19853120 19856933 - Bpe011122.1 Bpe13g01457 1457
5 34475059 34476159 + CaPI482276_05g027120.1 Cam05g2712 2712
5 34495820 34498565 - CaPI482276_05g027150.1 Cam05g2715 2715
5 34512565 34517536 - CaPI482276_05g027160.1 Cam05g2716 2716
5 34530254 34533690 + CaPI482276_05g027180.1 Cam05g2718 2718
4 10005195 10021662 - Carg14359-RA Car04g01746 1746
4 10022884 10027521 - Carg14358-RA Car04g01747 1747
4 10032393 10037454 - Carg14357-RA Car04g01748 1748
4 10042770 10045304 + Carg14356-RA Car04g01749 1749
5 9120 13528 - Carg21802-RA Car05g00002 2
18 8483236 8487109 - Carg14458-RA Car18g00740 740
5 35618996 35620096 + CcPI632755_05g027840.1 Cco05g2784 2784
5 35639349 35642094 - CcPI632755_05g027870.1 Cco05g2787 2787
5 35655765 35660748 - CcPI632755_05g027880.1 Cco05g2788 2788
5 35674504 35678199 + CcPI632755_05g027900.1 Cco05g2790 2790
5 37927958 37929058 + CePI673135_05g027440.1 Cec05g2744 2744
5 37948522 37951267 - CePI673135_05g027470.1 Cec05g2747 2747
5 37965163 37970077 - CePI673135_05g027480.1 Cec05g2748 2748
5 37982753 37987909 + CePI673135_05g027490.1 Cec05g2749 2749
9 2816748 2819942 - Chy9G160420.1 Chy09g00326 326
9 2823954 2827443 - Chy9G160430.1 Chy09g00327 327
10 14810990 14814445 - Chy10G181100.1 Chy10g00916 916
10 14824992 14829828 + Chy10G181110.1 Chy10g00917 917
10 14841488 14844462 + Chy10G181120.1 Chy10g00918 918
10 14847140 14861288 + Chy10G181130.1 Chy10g00919 919
5 34682871 34683977 + ClG42_05g0271500.10 Clacu05g2715 2715
5 34703515 34706260 - ClG42_05g0271800.10 Clacu05g2718 2718
5 34720073 34725042 - ClG42_05g0271900.10 Clacu05g2719 2719
5 34739050 34742704 + ClG42_05g0272000.10 Clacu05g2720 2720
5 36605315 36609761 + ClCG05G025160.2 Cla05g02525 2525
5 36613469 36638579 - ClCG05G025180.2 Cla05g02526 2526
5 36651067 36656867 - ClCG05G025200.1 Cla05g02527 2527
5 36670102 36673755 + ClCG05G025210.2 Cla05g02528 2528
4 8612070 8627145 - CmaCh04G017130.1 Cma04g01713 1713
4 8627964 8631134 - CmaCh04G017140.1 Cma04g01714 1714
4 8636950 8642267 - CmaCh04G017160.1 Cma04g01716 1716
4 8643578 8649315 + CmaCh04G017170.1 Cma04g01717 1717
5 6807 11099 - CmaCh05G000020.1 Cma05g00002 2
18 7074572 7077581 - CmaCh18G008090.1 Cma18g00809 809
10 3255765 3269972 - MELO3C012011.2.1 Cme10g00507 507
10 3271116 3276812 - MELO3C012010.2.1 Cme10g00508 508
10 3288116 3294484 - MELO3C012009.2.1 Cme10g00509 509
10 3304955 3307542 + MELO3C012008.2.1 Cme10g00510 510
4 20324007 20332776 + CmoCh04G028460.1 Cmo04g02846 2846
18 9538561 9543264 - CmoCh18G008110.1 Cmo18g00811 811
5 34420884 34421990 + CmPI595203_05g025690.1 Cmu05g2569 2569
5 34441531 34444276 - CmPI595203_05g025720.1 Cmu05g2572 2572
5 34458125 34463094 - CmPI595203_05g025730.1 Cmu05g2573 2573
5 34477103 34480756 + CmPI595203_05g025740.1 Cmu05g2574 2574
8 6459419 6461823 + Conep08aG0067200.1 Cone8ag0649 649
8 6474351 6479819 - Conep08aG0067300.1 Cone8ag0650 650
12 5709420 5734385 + Conep12aG0065600.1 Cone12ag0633 633
13 8552982 8560703 - Conep13aG0105800.1 Cone13ag1027 1027
13 8565499 8570263 - Conep13aG0106000.1 Cone13ag1029 1029
13 8573063 8578703 - Conep13aG0106100.1 Cone13ag1030 1030
13 8583095 8584490 + Conep13aG0106200.1 Cone13ag1031 1031
19 7599875 7610174 - Conep19aG0105000.1 Cone19ag1018 1018
19 7611801 7616847 - Conep19aG0105100.1 Cone19ag1019 1019
19 7621060 7625600 - Conep19aG0105200.1 Cone19ag1020 1020
19 7628271 7632617 - Conep19aG0105300.1 Cone19ag1021 1021
19 7633220 7635213 + Conep19aG0105400.1 Cone19ag1022 1022
1 9066361 9082704 - Cp4.1LG01g15190.1 Cpe01g01517 1517
1 9083985 9088791 - Cp4.1LG01g15170.1 Cpe01g01518 1518
1 9094534 9100350 - Cp4.1LG01g15180.1 Cpe01g01519 1519
1 9104661 9109036 + Cp4.1LG01g15140.1 Cpe01g01520 1520
9 3294603 3299126 + Cp4.1LG09g04980.1 Cpe09g00496 496
13 7755145 7759068 + Cp4.1LG13g08840.1 Cpe13g00909 909
13 7759641 7763609 + Cp4.1LG13g08830.1 Cpe13g00910 910
5 37777964 37779064 + CrPI670011_05g026820.1 Cre05g2682 2682
5 37798535 37801280 - CrPI670011_05g026850.1 Cre05g2685 2685
5 37815408 37820388 - CrPI670011_05g026870.1 Cre05g2687 2687
5 37835253 37838197 + CrPI670011_05g026880.1 Cre05g2688 2688
5 25803240 25807566 - CsaV3_5G031680.1 Csa05g02349 2349
5 25816821 25822718 + CsaV3_5G031690.1 Csa05g02350 2350
5 25831660 25837480 + CsaV3_5G031700.1 Csa05g02351 2351
5 25838811 25855022 + CsaV3_5G031710.1 Csa05g02352 2352
4 4882703 4897843 - Lsi04G005300.1 Lsi04g00530 530
4 4900865 4907283 - Lsi04G005310.1 Lsi04g00531 531
4 4919570 4924398 - Lsi04G005320.1 Lsi04g00532 532
4 4939731 4943815 + Lsi04G005340.1 Lsi04g00534 534
1 8905519 8916899 - Vvi1g741 Vvi1g741 741
1 8922596 8933413 + Vvi1g742 Vvi1g742 742
1 8939368 8950208 + Vvi1g743 Vvi1g743 743
1 8955332 8956374 + Vvi1g744 Vvi1g744 744
1 8958842 8962074 + Vvi1g745 Vvi1g745 745
1 8972482 8973247 - Vvi1g746 Vvi1g746 746
1 8987937 8989738 + Vvi1g747 Vvi1g747 747
1 8992773 9017978 - Vvi1g748 Vvi1g748 748
1 9030988 9034081 + Vvi1g749 Vvi1g749 749
1 9035170 9039037 - Vvi1g750 Vvi1g750 750
       

DecoBrowse