Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1220 . . . . . . Bma04g00397 . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1518 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1221 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1222 . . . . . . . . Cmo04g02543 Cmo15g00626 . . . . . Cpe06g00929 . Bhi04g01815 Tan11g1185 . . . . . Cla08g00665 Cam08g1096 Cec08g0681 Cco08g0790 Clacu08g0802 . Cre08g0606 . . Cone17ag0797 Cone20ag0396 . . . Cme03g00394 . Blo18g00220 . Bda13g01530 Bpe02g01601 Bpe14g00331 Bma01g00869 . . . . . . Car04g02341 Car15g00570 . . . . . . . . . . . . . . . . Lsi08g00526 . Chy03g00590 .
Vvi18g1223 . . . . . Bpe04g00386 . . . . . Cma09g01091 . . . Cpe06g00891 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo09g01100 . . . Car09g00989 . . . . . . . . . Cla09g00972 Cam09g1024 Cec09g1027 Cco09g1039 . . Cre09g0989 . . . .
Vvi18g1224 . . . . . Bpe04g00021 . . . . . . . . Sed03g0461 . Cpe13g00666 Bhi04g01811 Tan11g1182 Cmetu01g0419 . Hepe02g2772 . Lcy10g1320 Cla08g00666 Cam08g1097 Cec08g0682 Cco08g0791 Clacu08g0803 . Cre08g0607 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00527 . Chy03g00591 .
Vvi18g1225 . . . . . . . . . Cmo15g00624 . . . . . . . Bhi04g01810 . . . . . Lcy10g1321 . . . . . . . . . . . . . . Cme03g00393 . . . . . . . . . . . . . . Car15g00569 . . . . . . . . . . . . . . . . . . . .
Vvi18g1226 Blo01g01329 . Bda01g00694 Bda03g00031 Bpe02g00612 . . Bma01g02113 . . Cma01g00992 Cma09g01092 Car01g00883 . . Cpe06g00892 . . . . . . . . . . . . . . . Cone4ag1517 Cone7ag1434 . . . . . . . . . . . . . . . Cmo01g01029 Cmo09g01101 . . . Car09g00990 . Cpe02g00900 Bhi09g01507 . . . . . . Cla09g00920 Cam09g0972 Cec09g0977 Cco09g0983 . . Cre09g0941 . . . .
Vvi18g1227 . Blo12g01107 . Bda03g00032 . . Bma04g00030 . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag1435 . . . . . . . . . . . . . . . . . . . Car05g00700 . . . . . . . . . . . . . . . . . . . . .
Vvi18g1228 Blo01g01330 . . . Bpe02g00611 . . Bma01g02114 Cmo04g02544 . . Cma09g01093 . . . Cpe06g00893 Cpe13g00667 Bhi04g01808 Tan11g1179 . . . . Lcy10g1323 Cla08g00667 Cam08g1098 Cec08g0683 Cco08g0792 Clacu08g0804 . Cre08g0608 Cone4ag1515 . Cone17ag0796 Cone20ag0394 . . . Cme03g00392 Blo17g00220 . . Bda13g01529 Bpe02g01113 Bpe14g00332 . Bma02g00278 . . Cmo09g01102 . . Car04g02342 Car09g00991 Cpe01g02103 . Bhi09g01506 . . . . . . . . . . . . . Lsi08g00528 . Chy03g00592 Cme01g00693
Vvi18g1229 Blo01g01331 . Bda01g00696 . . . . . . . Cma01g00991 . Car01g00882 . . . . . . . . . . . . . . . . . . Cone4ag1514 Cone7ag1437 . . . . . . . . . . . . . . . Cmo01g01028 . . . . . . Cpe02g00901 Bhi09g01505 . . . . . . Cla09g00921 Cam09g0973 Cec09g0978 Cco09g0984 . . Cre09g0942 . . . .
   
Previous Page 2188 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
1 34105711 34109347 - Bda032914 Bda01g00694 694
1 34116144 34118737 + Bda002732.1 Bda01g00696 696
3 470730 471985 - Bda015964.2 Bda03g00031 31
3 472624 474855 + Bda015965.1 Bda03g00032 32
13 38340360 38341838 + Bda000378.1 Bda13g01529 1529
13 38347659 38354836 - Bda000379.1 Bda13g01530 1530
4 44643823 44646242 + XM_039029335.1 Bhi04g01808 1808
4 44649316 44650922 - XM_039029337.1 Bhi04g01810 1810
4 44649459 44650924 - XM_039029338.1 Bhi04g01811 1811
4 44653883 44659137 - XM_039029706.1 Bhi04g01815 1815
9 39360402 39362785 - XM_039041962.1 Bhi09g01505 1505
9 39487371 39492240 + XM_039044349.1 Bhi09g01506 1506
9 39587681 39595194 + XM_039043022.1 Bhi09g01507 1507
1 50755026 50759565 - BLOR01329 Blo01g01329 1329
1 50765988 50769925 - BLOR01330 Blo01g01330 1330
1 50805466 50813142 + BLOR01331 Blo01g01331 1331
12 28760852 28764814 - BLOR05126 Blo12g01107 1107
17 2267054 2268891 + BLOR16041 Blo17g00220 220
18 2170425 2174696 - BLOR08708 Blo18g00220 220
1 8146194 8150449 - Bma001090.1 Bma01g00869 869
1 77314230 77316067 - Bma002943.1 Bma01g02113 2113
1 77337410 77338870 - Bma002945.1 Bma01g02114 2114
2 3214734 3216060 + Bma014729.1 Bma02g00278 278
4 330672 341688 + Bma018482.1 Bma04g00030 30
4 3242052 3245899 - Bma018859.1 Bma04g00397 397
2 3984369 3986714 + Bpe008450.1 Bpe02g00611 611
2 3987975 3989781 + Bpe008451.1 Bpe02g00612 612
2 14778556 14780095 + Bpe008971.1 Bpe02g01113 1113
2 18914178 18918143 + Bpe009447.1 Bpe02g01601 1601
4 204649 205626 + Bpe025564 Bpe04g00021 21
4 2427579 2431263 - Bpe025618 Bpe04g00386 386
14 3222967 3227664 + Bpe006984.2 Bpe14g00331 331
14 3228959 3230941 - Bpe006985.1 Bpe14g00332 332
8 17335568 17340358 + CaPI482276_08g010960.1 Cam08g1096 1096
8 17350711 17352892 + CaPI482276_08g010970.1 Cam08g1097 1097
8 17355996 17357577 - CaPI482276_08g010980.1 Cam08g1098 1098
9 10048699 10053385 - CaPI482276_09g009720.1 Cam09g0972 972
9 10054708 10056691 + CaPI482276_09g009730.1 Cam09g0973 973
9 10650995 10657146 + CaPI482276_09g010240.1 Cam09g1024 1024
1 8091612 8094294 - Carg25045-RA Car01g00882 882
1 8099115 8103662 + Carg25046-RA Car01g00883 883
4 18836942 18841426 + Carg15775-RA Car04g02341 2341
4 18841230 18844577 - Carg15776-RA Car04g02342 2342
5 4750165 4753666 + Carg19829-RA Car05g00700 700
9 6367985 6369032 + Carg27261-RA Car09g00989 989
9 6369791 6372166 - Carg27262-RA Car09g00990 990
9 6376028 6377978 - Carg27263-RA Car09g00991 991
15 3150069 3151396 - Carg01586-RA Car15g00569 569
15 3152632 3156576 - Carg01585-RA Car15g00570 570
8 19715236 19733317 + CcPI632755_08g007900.1 Cco08g0790 790
8 19735658 19737838 + CcPI632755_08g007910.1 Cco08g0791 791
8 19740946 19742516 - CcPI632755_08g007920.1 Cco08g0792 792
9 9306301 9310961 - CcPI632755_09g009830.1 Cco09g0983 983
9 9312307 9314260 + CcPI632755_09g009840.1 Cco09g0984 984
9 9960065 9964454 + CcPI632755_09g010390.1 Cco09g1039 1039
8 18539937 18549577 + CePI673135_08g006810.1 Cec08g0681 681
8 18549744 18558868 + CePI673135_08g006820.1 Cec08g0682 682
8 18561925 18563518 - CePI673135_08g006830.1 Cec08g0683 683
9 9335793 9340365 - CePI673135_09g009770.1 Cec09g0977 977
9 9341672 9343669 + CePI673135_09g009780.1 Cec09g0978 978
9 9963241 9967627 + CePI673135_09g010270.1 Cec09g1027 1027
3 8446379 8452231 + Chy3G055700.1 Chy03g00590 590
3 8454997 8456271 + Chy3G055710.1 Chy03g00591 591
3 8470288 8471924 - Chy3G055720.1 Chy03g00592 592
8 18077809 18082524 + ClG42_08g0080200.10 Clacu08g0802 802
8 18084820 18086157 + ClG42_08g0080300.10 Clacu08g0803 803
8 18086963 18091692 - ClG42_08g0080400.10 Clacu08g0804 804
8 18931191 18946535 + ClCG08G006480.2 Cla08g00665 665
8 18948330 18955338 + ClCG08G006500.1 Cla08g00666 666
8 18953004 18955338 - ClCG08G006510.1 Cla08g00667 667
9 9576805 9581953 - ClCG09G009860.1 Cla09g00920 920
9 9583018 9586564 + ClCG09G009870.1 Cla09g00921 921
9 10221520 10225909 + ClCG09G010400.1 Cla09g00972 972
1 7124565 7128201 - CmaCh01G009910.1 Cma01g00991 991
1 7133090 7135932 + CmaCh01G009920.1 Cma01g00992 992
9 5882744 5883746 + CmaCh09G010910.1 Cma09g01091 1091
9 5884900 5888035 - CmaCh09G010920.1 Cma09g01092 1092
9 5895687 5898957 - CmaCh09G010930.1 Cma09g01093 1093
1 6364771 6369106 + MELO3C023696.2.1 Cme01g00693 693
3 5483424 5485850 + MELO3C008403.2.1 Cme03g00392 392
3 5483477 5492370 - MELO3C008404.2.1 Cme03g00393 393
3 5494411 5506730 - MELO3C008405.2.1 Cme03g00394 394
1 17739732 17740993 - PI0017633.1 Cmetu01g0419 419
1 8055873 8059593 - CmoCh01G010280.1 Cmo01g01028 1028
1 8064520 8067142 + CmoCh01G010290.1 Cmo01g01029 1029
4 18668223 18673497 + CmoCh04G025430.1 Cmo04g02543 2543
4 18673301 18676346 - CmoCh04G025440.1 Cmo04g02544 2544
9 6118311 6119412 + CmoCh09G011000.1 Cmo09g01100 1100
9 6120429 6123283 - CmoCh09G011010.1 Cmo09g01101 1101
9 6129284 6135060 - CmoCh09G011020.1 Cmo09g01102 1102
15 3037226 3040615 - CmoCh15G006240.1 Cmo15g00624 624
15 3041686 3047016 - CmoCh15G006260.1 Cmo15g00626 626
4 11760468 11762210 - Conep04aG0156600.1 Cone4ag1514 1514
4 11763129 11764947 + Conep04aG0156700.1 Cone4ag1515 1515
4 11773130 11774793 + Conep04aG0156900.1 Cone4ag1517 1517
4 11776179 11776933 + Conep04aG0157000.1 Cone4ag1518 1518
7 10178734 10180621 - Conep07aG0147600.1 Cone7ag1434 1434
7 10180943 10183083 + Conep07aG0147700.1 Cone7ag1435 1435
7 10189946 10191676 + Conep07aG0147900.1 Cone7ag1437 1437
17 6252467 6253521 + Conep17aG0081400.1 Cone17ag0796 796
17 6260169 6264758 - Conep17aG0081500.1 Cone17ag0797 797
20 1911647 1912933 + Conep20aG0040800.1 Cone20ag0394 394
20 1916671 1921811 - Conep20aG0041000.1 Cone20ag0396 396
1 17799187 17801847 - Cp4.1LG01g20950.1 Cpe01g02103 2103
2 6446908 6456769 - Cp4.1LG02g08750.1 Cpe02g00900 900
2 6465002 6468903 + Cp4.1LG02g08800.1 Cpe02g00901 901
6 5962073 5963213 + Cp4.1LG06g07680.1 Cpe06g00891 891
6 5964213 5967169 - Cp4.1LG06g07630.1 Cpe06g00892 892
6 5973227 5975234 - Cp4.1LG06g07710.1 Cpe06g00893 893
6 6880916 6882412 - Cp4.1LG06g09160.1 Cpe06g00929 929
13 6282551 6286851 + Cp4.1LG13g04130.1 Cpe13g00666 666
13 6284563 6286994 - Cp4.1LG13g04100.1 Cpe13g00667 667
8 18999568 19004342 + CrPI670011_08g006060.1 Cre08g0606 606
8 19006757 19010888 + CrPI670011_08g006070.1 Cre08g0607 607
8 19012054 19013631 - CrPI670011_08g006080.1 Cre08g0608 608
9 9545153 9549737 - CrPI670011_09g009410.1 Cre09g0941 941
9 9551017 9552987 + CrPI670011_09g009420.1 Cre09g0942 942
9 10168513 10172899 + CrPI670011_09g009890.1 Cre09g0989 989
2 76306762 76308036 + Hsped.02g27720.1 Hepe02g2772 2772
10 36072327 36074102 + Maker00008493 Lcy10g1320 1320
10 36080373 36081809 + Maker00008637 Lcy10g1321 1321
10 36084599 36087239 - Maker00008636 Lcy10g1323 1323
8 13203288 13210184 + Lsi08G005260.1 Lsi08g00526 526
8 13214587 13215595 + Lsi08G005270.1 Lsi08g00527 527
8 13222203 13224336 - Lsi08G005280.1 Lsi08g00528 528
3 2772858 2774591 + Sed0021514.1 Sed03g0461 461
11 9761728 9764222 + Tan0006199.1 Tan11g1179 1179
11 9765694 9767703 - Tan0004215.1 Tan11g1182 1182
11 9772048 9778350 - Tan0022007.3 Tan11g1185 1185
18 13733151 13734200 - Vvi18g1220 Vvi18g1220 1220
18 13735970 13739523 - Vvi18g1221 Vvi18g1221 1221
18 13787111 13799999 + Vvi18g1222 Vvi18g1222 1222
18 13803710 13805352 + Vvi18g1223 Vvi18g1223 1223
18 13805367 13806761 + Vvi18g1224 Vvi18g1224 1224
18 13810561 13811785 + Vvi18g1225 Vvi18g1225 1225
18 13811800 13817045 - Vvi18g1226 Vvi18g1226 1226
18 13833440 13835700 + Vvi18g1227 Vvi18g1227 1227
18 13836491 13838405 - Vvi18g1228 Vvi18g1228 1228
18 13848111 13855557 + Vvi18g1229 Vvi18g1229 1229
       

DecoBrowse