Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g892 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone18ag0857 Cone11ag0654 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g893 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone10ag0582 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g894 . . . . . . . . . . Cma03g00776 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo03g00808 . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g895 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g896 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g897 . . Bda04g00312 . . . Bma09g00337 . . . . Cma07g00742 Car03g00706 Car07g00729 . . . . . . . . . . . . . . . . . . . Cone10ag0558 . Lsi01g01041 . . . . . . . . Bpe06g00240 . . . . Cmo07g00763 . . . . . . . . . . . . . . . . . . . . . . Chy02g00959 .
Vvi4g898 . . . . . . . . . . . Cma07g00743 . Car07g00730 . . . . . . . . . . . . . . . . . . . Cone6ag1357 . . . . . . . . Bda14g01215 . . . . . . Cmo07g00764 . . . . . . . . . . . . . . . . . . . . . . Chy02g00960 .
Vvi4g899 Blo04g00957 . Bda04g00314 . . . Bma09g00339 . . . . Cma07g00745 . Car07g00732 . . . . . . . . . . . . . . . . . . . Cone6ag1355 . Lsi01g01042 . . . . . . . . Bpe06g00241 . . . . Cmo07g00765 . . . . . . . . . . . . . . . . . . . . . . Chy02g00962 .
Vvi4g900 . . Bda04g00315 . . . Bma09g00348 . . . . Cma07g00746 . Car07g00733 . . . . . . . . . . . . . . . . . . . . . Lsi01g01043 . . . . . . Bda14g01214 . Bpe06g00242 Bma03g01078 . . . Cmo07g00766 . . . . . . . . . . . . . . . . . . . . . . Chy02g00963 .
Vvi4g901 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda14g01211 . . Bma03g01077 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 438 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
4 46775280 46782378 + Bda019187.1 Bda04g00312 312
4 46846557 46848377 + Bda019189.1 Bda04g00314 314
4 46953423 46957955 - Bda019192.1 Bda04g00315 315
14 12073596 12079223 - Bda028069.1 Bda14g01211 1211
14 12216414 12220509 + Bda033967 Bda14g01214 1214
14 12224511 12225135 + Bda028077.1 Bda14g01215 1215
4 11686656 11689535 - BLOR13869 Blo04g00957 957
3 13178619 13184372 - Bma017450.1 Bma03g01077 1077
3 13387749 13390216 + Bma017453.1 Bma03g01078 1078
9 29213796 29220988 + Bma029241.1 Bma09g00337 337
9 29462782 29464605 + Bma029244.1 Bma09g00339 339
9 30200720 30205804 - Bma029260.2 Bma09g00348 348
6 12753405 12760589 + Bpe019726.1 Bpe06g00240 240
6 12780752 12782574 + Bpe019727.2 Bpe06g00241 241
6 12829635 12837208 - Bpe019730.1 Bpe06g00242 242
3 6152679 6161121 + Carg00666-RA Car03g00706 706
7 3754620 3769166 + Carg05250-RA Car07g00729 729
7 3768875 3769829 - Carg05251-RA Car07g00730 730
7 3773337 3776000 + Carg05253-RA Car07g00732 732
7 3779080 3782668 - Carg05254-RA Car07g00733 733
2 6377678 6386908 + Chy2G032260.1 Chy02g00959 959
2 6387710 6388845 - Chy2G032270.1 Chy02g00960 960
2 6393775 6396771 + Chy2G032290.1 Chy02g00962 962
2 6403463 6408346 - Chy2G032300.1 Chy02g00963 963
3 6032070 6039764 + CmaCh03G007760.1 Cma03g00776 776
7 3282381 3296989 + CmaCh07G007420.1 Cma07g00742 742
7 3296922 3297920 - CmaCh07G007430.1 Cma07g00743 743
7 3301330 3303888 + CmaCh07G007450.1 Cma07g00745 745
7 3306916 3310652 - CmaCh07G007460.1 Cma07g00746 746
3 6541066 6548932 + CmoCh03G008080.1 Cmo03g00808 808
7 3445025 3459069 + CmoCh07G007630.1 Cmo07g00763 763
7 3459330 3460319 - CmoCh07G007640.1 Cmo07g00764 764
7 3462880 3466667 + CmoCh07G007650.1 Cmo07g00765 765
7 3469757 3471999 - CmoCh07G007660.1 Cmo07g00766 766
6 10890697 10893527 - Conep06aG0141100.1 Cone6ag1355 1355
6 10903332 10904202 + Conep06aG0141300.1 Cone6ag1357 1357
10 2589451 2590356 + Conep10aG0057500.1 Cone10ag0558 558
10 2729860 2733439 - Conep10aG0059900.1 Cone10ag0582 582
11 4358722 4360635 + Conep11aG0067100.1 Cone11ag0654 654
18 5881612 5883376 - Conep18aG0088300.1 Cone18ag0857 857
1 8596435 8610677 + Lsi01G010410.1 Lsi01g01041 1041
1 8619376 8622384 + Lsi01G010420.1 Lsi01g01042 1042
1 8628619 8634404 - Lsi01G010430.1 Lsi01g01043 1043
4 17354672 17358081 + Vvi4g892 Vvi4g892 892
4 17361963 17370460 + Vvi4g893 Vvi4g893 893
4 17380959 17385152 + Vvi4g894 Vvi4g894 894
4 17385598 17388133 + Vvi4g895 Vvi4g895 895
4 17388143 17391078 + Vvi4g896 Vvi4g896 896
4 17398365 17416188 + Vvi4g897 Vvi4g897 897
4 17416867 17417844 - Vvi4g898 Vvi4g898 898
4 17420698 17425264 + Vvi4g899 Vvi4g899 899
4 17429917 17436016 - Vvi4g900 Vvi4g900 900
4 17449432 17456409 + Vvi4g901 Vvi4g901 901
       

DecoBrowse