Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g222 . . . . . . Bma07g01015 . . . Cma02g00936 . Car02g00685 . . . Cpe05g00777 . . . . . . . . . . . . . . . . . . . Csa05g00175 Chy09g01322 . . . Bda07g01946 Bda09g00648 Bpe08g00892 . . . . . . . . . . . . Bhi12g00097 . . . . . Lcy12g1532 Cla01g00155 Cam01g0160 Cec01g0156 Cco01g0162 Clacu01g0155 Cmu01g0155 Cre09g2351 Lsi09g00146 . . Cme09g01870
Vvi2g223 . . . . . . . Bma14g00107 Cmo06g00594 Cmo16g01270 . . . . . . . . . . . . . . Cla10g00089 Cam10g0089 Cec10g0093 Cco10g0095 Clacu10g0090 Cmu10g0937 Cre10g0351 . . . . Lsi07g01118 . . Cme06g02398 Blo03g00810 . Bda07g00146 . . . . . . . . Cma06g00592 Cma16g01226 Car06g00522 Car16g01154 Cpe08g00911 . . . . . . . . . . . . . . . . . . .
Vvi2g224 . . . . . . Bma07g01016 . Cmo06g00593 . . . . . . . . . . . . . . . Cla10g00088 Cam10g0088 Cec10g0092 Cco10g0094 Clacu10g0089 Cmu10g0936 Cre10g0350 Cone8ag0534 . . . Lsi07g01117 . . Cme06g02397 . Blo19g00144 . . Bpe08g00893 . . . . . . Cma06g00591 . . . Cpe08g00912 . . . . . . . . . . . . . . . . . . .
Vvi2g225 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00035 . . . . Bda07g01948 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g226 . . . . . . . Bma14g00106 . . Cma02g00937 . Car02g00686 . . . Cpe05g00776 . . . . . . . . . . . . . . . . . . . Csa05g00174 Chy09g01323 . Blo03g00809 . Bda07g00147 . . Bpe11g00364 . . . Cmo02g00947 . . . . . . . Bhi12g00096 . . . . . Lcy12g1531 Cla01g00154 Cam01g0159 Cec01g0155 Cco01g0161 Clacu01g0154 Cmu01g0154 Cre09g2352 . . . Cme09g01871
Vvi2g227 . . . . . Bpe07g00253 . . . . . . . . . Cpe14g01013 . . . . . . . . Cla10g00087 Cam10g0086 Cec10g0090 Cco10g0092 Clacu10g0087 Cmu10g0934 Cre10g0348 . . . . Lsi07g01114 . . Cme06g02395 . . . . . . . . . . . . Cma16g01227 . Car16g01155 . . . . . . . . . . . . . . . . . . . .
Vvi2g228 . . . . . . . . . . . Cma15g01382 . Car15g01248 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cpe13g00069 . . . . . . . . . . . . . . . . . .
Vvi2g229 . . . . . . Bma07g01018 . . . Cma02g00938 . Car02g00687 . . . Cpe05g00775 . . . . . . . . . . . . . . Cone8ag0548 . . . . Csa05g00173 Chy09g01324 . . Blo19g00142 . Bda09g00647 Bpe08g00894 . . . . Cmo02g00948 . . . . . . . Bhi12g00095 . . Lac11g1936 Hepe06g1443 . Lcy12g1530 Cla01g00153 Cam01g0158 Cec01g0154 Cco01g0160 Clacu01g0153 Cmu01g0153 Cre09g2353 Lsi09g00145 . . Cme09g01872
Vvi2g230 . . . . . . . . Cmo06g00592 Cmo16g01271 . . . . . Cpe14g01014 . . . . . . . . . . . . . . . Cone8ag0549 Cone12ag0550 . . Lsi07g01113 . . Cme06g02394 . . . . . . . Bma12g00255 . . . Cma06g00589 Cma16g01228 Car06g00521 Car16g01156 Cpe08g00913 . . . . . . . . . . . . . . . . . . .
Vvi2g231 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0553 Cone12ag0552 . . . Csa05g00170 Chy09g01328 . Blo03g00808 . Bda07g00148 . . Bpe11g00365 . . . . . . . . . . . Bhi12g00092 . . . . . Lcy12g1527 . . . . . . . Lsi09g00142 . . Cme09g01875
   
Previous Page 163 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
7 1794103 1795290 + Bda025213.1 Bda07g00146 146
7 1799490 1803224 - Bda025214.1 Bda07g00147 147
7 1809387 1812958 + Bda025215.1 Bda07g00148 148
7 36902774 36905384 + Bda028925.1 Bda07g01946 1946
7 36920874 36924184 - Bda028928.1 Bda07g01948 1948
9 9704481 9707277 + Bda031288.1 Bda09g00647 647
9 9738191 9741894 - Bda031290.1 Bda09g00648 648
12 3089714 3096574 - XM_039050998.1 Bhi12g00092 92
12 3167044 3169250 + XM_039019361.1 Bhi12g00095 95
12 3176604 3179881 + XM_039051308.1 Bhi12g00096 96
12 3179853 3187492 - XM_039051307.1 Bhi12g00097 97
3 33446504 33449251 - BLOR11989 Blo03g00808 808
3 33461063 33465060 + BLOR11990 Blo03g00809 809
3 33465879 33470614 - BLOR11991 Blo03g00810 810
19 5007244 5012357 + BLOR09485 Blo19g00142 142
19 5015876 5016528 + BLOR09487 Blo19g00144 144
7 40494740 40498384 + Bma026191.1 Bma07g01015 1015
7 40517280 40517926 - Bma026193.1 Bma07g01016 1016
7 40567741 40570833 - Bma026197.1 Bma07g01018 1018
12 3305310 3321469 + Bma007149.1 Bma12g00255 255
14 1453673 1457712 + Bma010511.1 Bma14g00106 106
14 1461724 1462911 - Bma010512.1 Bma14g00107 107
7 1824559 1827034 - Bpe021065.1 Bpe07g00253 253
8 11303370 11306972 + Bpe023016.1 Bpe08g00892 892
8 11308293 11310662 - Bpe023017.1 Bpe08g00893 893
8 11311508 11318821 - Bpe023018.1 Bpe08g00894 894
11 2749258 2752726 - Bpe003739.1 Bpe11g00364 364
11 2754036 2757359 - Bpe003740.2 Bpe11g00365 365
1 1946938 1948815 + CaPI482276_01g001580.1 Cam01g0158 158
1 1951401 1954021 + CaPI482276_01g001590.1 Cam01g0159 159
1 1954497 1962193 - CaPI482276_01g001600.1 Cam01g0160 160
10 2449545 2454474 - CaPI482276_10g000860.1 Cam10g0086 86
10 2458120 2458800 + CaPI482276_10g000880.1 Cam10g0088 88
10 2460072 2465792 - CaPI482276_10g000890.1 Cam10g0089 89
2 5095582 5096663 + Carg08538-RA Car02g00685 685
2 5100017 5102042 - Carg08537-RA Car02g00686 686
2 5102512 5104908 - Carg08536-RA Car02g00687 687
6 2927950 2940538 + Carg16273-RA Car06g00521 521
6 2941375 2950823 - Carg16274-RA Car06g00522 522
15 9683254 9690893 + Carg20836-RA Car15g01248 1248
16 9836908 9844476 + Carg19487-RA Car16g01154 1154
16 9845792 9848500 + Carg19486-RA Car16g01155 1155
16 9849413 9861557 - Carg19485-RA Car16g01156 1156
1 1515606 1517485 + CcPI632755_01g001600.1 Cco01g0160 160
1 1520050 1522680 + CcPI632755_01g001610.1 Cco01g0161 161
1 1523157 1530958 - CcPI632755_01g001620.1 Cco01g0162 162
10 854597 859504 - CcPI632755_10g000920.1 Cco10g0092 92
10 862997 863859 + CcPI632755_10g000940.1 Cco10g0094 94
10 865099 870795 - CcPI632755_10g000950.1 Cco10g0095 95
1 1516538 1518414 + CePI673135_01g001540.1 Cec01g0154 154
1 1520965 1523563 + CePI673135_01g001550.1 Cec01g0155 155
1 1524039 1533887 - CePI673135_01g001560.1 Cec01g0156 156
10 881560 886398 - CePI673135_10g000900.1 Cec10g0090 90
10 889956 890822 + CePI673135_10g000920.1 Cec10g0092 92
10 892056 897750 - CePI673135_10g000930.1 Cec10g0093 93
9 15125284 15130237 + Chy9G170380.1 Chy09g01322 1322
9 15130770 15132869 - Chy9G170390.1 Chy09g01323 1323
9 15134970 15136986 - Chy9G170400.1 Chy09g01324 1324
9 15146632 15151790 + Chy9G170440.1 Chy09g01328 1328
1 1567138 1569013 + ClG42_01g0015300.10 Clacu01g0153 153
1 1571553 1574173 + ClG42_01g0015400.10 Clacu01g0154 154
1 1574650 1582364 - ClG42_01g0015500.10 Clacu01g0155 155
10 1172100 1176899 - ClG42_10g0008700.10 Clacu10g0087 87
10 1180383 1181223 + ClG42_10g0008900.10 Clacu10g0089 89
10 1182406 1188077 - ClG42_10g0009000.10 Clacu10g0090 90
1 1563894 1566164 + ClCG01G001570.1 Cla01g00153 153
1 1568379 1571080 + ClCG01G001580.2 Cla01g00154 154
1 1571557 1579252 - ClCG01G001590.1 Cla01g00155 155
10 895413 898659 - ClCG10G000840.2 Cla10g00087 87
10 899850 902400 + ClCG10G000850.2 Cla10g00088 88
10 903250 909417 - ClCG10G000860.2 Cla10g00089 89
2 5566860 5570919 + CmaCh02G009360.1 Cma02g00936 936
2 5570810 5573339 - CmaCh02G009370.1 Cma02g00937 937
2 5573502 5576018 - CmaCh02G009380.1 Cma02g00938 938
6 2831850 2843752 + CmaCh06G005890.1 Cma06g00589 589
6 2844950 2847737 + CmaCh06G005910.1 Cma06g00591 591
6 2847771 2860171 - CmaCh06G005920.1 Cma06g00592 592
15 8655223 8657508 + CmaCh15G013820.1 Cma15g01382 1382
16 9279049 9286137 + CmaCh16G012260.1 Cma16g01226 1226
16 9288049 9290875 + CmaCh16G012270.1 Cma16g01227 1227
16 9292258 9318370 - CmaCh16G012280.1 Cma16g01228 1228
6 31100278 31109821 + MELO3C013777.2.1 Cme06g02394 2394
6 31110980 31113464 - MELO3C013778.2.1 Cme06g02395 2395
6 31116211 31117220 + MELO3C013780.2.1 Cme06g02397 2397
6 31117987 31123795 - MELO3C013781.2.1 Cme06g02398 2398
9 22869634 22874832 + MELO3C005778.2.1 Cme09g01870 1870
9 22874820 22877542 - MELO3C005779.2.1 Cme09g01871 1871
9 22878276 22880621 - MELO3C005780.2.1 Cme09g01872 1872
9 22895387 22898806 + MELO3C027083.2.1 Cme09g01875 1875
2 5790909 5793208 - CmoCh02G009470.1 Cmo02g00947 947
2 5794207 5796808 - CmoCh02G009480.1 Cmo02g00948 948
6 2913131 2927250 + CmoCh06G005920.1 Cmo06g00592 592
6 2927680 2930507 + CmoCh06G005930.1 Cmo06g00593 593
6 2930529 2937178 - CmoCh06G005940.1 Cmo06g00594 594
16 9060569 9072139 + CmoCh16G012700.1 Cmo16g01270 1270
16 9072710 9082154 - CmoCh16G012710.1 Cmo16g01271 1271
1 1520514 1522389 + CmPI595203_01g001530.1 Cmu01g0153 153
1 1524896 1527516 + CmPI595203_01g001540.1 Cmu01g0154 154
1 1527993 1535697 - CmPI595203_01g001550.1 Cmu01g0155 155
10 1323667 1328459 - CmPI595203_10g009340.1 Cmu10g0934 934
10 1331942 1332782 + CmPI595203_10g009360.1 Cmu10g0936 936
10 1333965 1339636 - CmPI595203_10g009370.1 Cmu10g0937 937
8 3913016 3913827 - Conep08aG0055500.1 Cone8ag0534 534
8 4070244 4072855 - Conep08aG0056900.1 Cone8ag0548 548
8 4082559 4096984 + Conep08aG0057000.1 Cone8ag0549 549
8 4159887 4163449 + Conep08aG0057400.1 Cone8ag0553 553
12 3937856 3956304 + Conep12aG0057100.1 Cone12ag0550 550
12 3966063 3967632 + Conep12aG0057300.1 Cone12ag0552 552
5 4812070 4814452 + Cp4.1LG05g07680.1 Cpe05g00775 775
5 4814905 4816971 + Cp4.1LG05g07670.1 Cpe05g00776 776
5 4817163 4821398 - Cp4.1LG05g07780.1 Cpe05g00777 777
8 7172714 7178693 + Cp4.1LG08g09010.1 Cpe08g00911 911
8 7178886 7181760 - Cp4.1LG08g09060.1 Cpe08g00912 912
8 7182865 7195360 - Cp4.1LG08g09110.1 Cpe08g00913 913
13 537556 541954 - Cp4.1LG13g00870.1 Cpe13g00069 69
14 8541208 8544011 + Cp4.1LG14g10010.1 Cpe14g01013 1013
14 8545214 8557364 - Cp4.1LG14g10250.1 Cpe14g01014 1014
9 42776677 42784456 + CrPI670011_09g023510.1 Cre09g2351 2351
9 42784933 42787552 - CrPI670011_09g023520.1 Cre09g2352 2352
9 42790140 42792016 - CrPI670011_09g023530.1 Cre09g2353 2353
10 2296252 2298531 - CrPI670011_10g003480.1 Cre10g0348 348
10 2302057 2302913 + CrPI670011_10g003500.1 Cre10g0350 350
10 2304165 2309837 - CrPI670011_10g003510.1 Cre10g0351 351
5 162609 166332 - CsaV3_5G000350.1 Csa05g00035 35
5 987784 991421 - CsaV3_5G001700.1 Csa05g00170 170
5 999043 1001472 + CsaV3_5G001730.1 Csa05g00173 173
5 1002677 1005179 + CsaV3_5G001740.1 Csa05g00174 174
5 1005477 1010405 - CsaV3_5G001750.1 Csa05g00175 175
6 65003776 65006149 + Hsped.06g14430.1 Hepe06g1443 1443
11 34824980 34830502 + Lag0032574.1 Lac11g1936 1936
12 35084247 35091476 - Maker00029186 Lcy12g1527 1527
12 35128333 35130602 + Maker00029236 Lcy12g1530 1530
12 35135255 35145125 + Maker00029437 Lcy12g1531 1531
12 35138602 35140686 - Maker00029185 Lcy12g1532 1532
7 16576131 16587959 + Lsi07G011130.1 Lsi07g01113 1113
7 16590267 16593143 - Lsi07G011140.1 Lsi07g01114 1114
7 16596660 16597628 + Lsi07G011170.1 Lsi07g01117 1117
7 16598922 16605054 - Lsi07G011180.1 Lsi07g01118 1118
9 1454169 1459423 - Lsi09G001420.1 Lsi09g00142 142
9 1474523 1481693 + Lsi09G001450.1 Lsi09g00145 145
9 1481564 1488249 - Lsi09G001460.1 Lsi09g00146 146
2 2104834 2108803 + Vvi2g222 Vvi2g222 222
2 2111569 2121699 + Vvi2g223 Vvi2g223 223
2 2121951 2123065 - Vvi2g224 Vvi2g224 224
2 2123934 2128496 - Vvi2g225 Vvi2g225 225
2 2133565 2137775 - Vvi2g226 Vvi2g226 226
2 2138691 2140585 + Vvi2g227 Vvi2g227 227
2 2141899 2143945 - Vvi2g228 Vvi2g228 228
2 2145206 2149181 - Vvi2g229 Vvi2g229 229
2 2150786 2160118 - Vvi2g230 Vvi2g230 230
2 2172172 2178520 + Vvi2g231 Vvi2g231 231
       

DecoBrowse