Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g694 . . . Bda07g01875 . . . . . Cmo18g01272 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0081 . Lsi05g01220 . . Cme06g01005 . . . . . . . . . . . . Cma18g01249 . Car18g01156 Cpe09g00088 . . . . . . . . Cla05g00886 Cam05g0973 Cec05g0977 Cco05g0976 Clacu05g0960 Cmu05g0917 Cre05g1001 . Csa03g01718 Chy06g00950 .
Vvi16g695 . . . . . . . . . . . . . . . . . . . . . . . . Cla01g00257 Cam01g0264 Cec01g0255 Cco01g0270 Clacu01g0263 Cmu01g0252 Cre09g2257 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g696 Blo06g01127 Blo15g00169 . . Bpe03g00123 Bpe07g00936 . . . Cmo18g01273 Cma02g01069 . Car02g00812 . Sed01g3583 Cpe05g00650 . Bhi01g01311 Tan01g0246 Cmetu06g0984 . Hepe07g0152 Mch10g0150 . Cla01g00435 Cam01g0458 Cec01g0447 Cco01g0469 Clacu01g0457 Cmu01g0436 Cre09g2076 . . . . Lsi05g01219 . . Cme06g01006 . . Bda06g00685 Bda15g00726 . . Bma08g00324 . . Cmo02g01087 . . Cma18g01250 . Car18g01157 Cpe09g00087 . Bhi12g00509 . . Lac11g0028 Hepe06g0699 . Lcy12g0026 Cla05g00887 Cam05g0974 Cec05g0978 Cco05g0977 Clacu05g0961 Cmu05g0918 Cre05g1003 . Csa03g01719 Chy06g00951 Cme09g01553
Vvi16g697 Blo06g01128 . . . . . . . . . . Cma15g01096 . Car15g01007 . . . . . . . . . . Cla01g00436 . . Cco01g0470 . . Cre09g2075 . Cone5ag0871 . . . . . . . . . Bda15g00725 . . Bma08g00301 . . . Cmo15g01154 . . . . . Cpe13g00255 Bhi12g00508 . . . . . Lcy12g0027 . . . . . . . . . . Cme09g01554
Vvi16g698 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00504 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g699 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g700 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g701 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g702 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g703 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00503 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 1930 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
6 9470303 9473064 + Bda023980.1 Bda06g00685 685
7 36162175 36169209 - Bda028847.2 Bda07g01875 1875
15 10647258 10675301 + Bda012578.1 Bda15g00725 725
15 10677084 10679415 - Bda012579.1 Bda15g00726 726
1 26357000 26362488 - XM_039021919.1 Bhi01g01311 1311
12 16095152 16132052 + XM_039051114.1 Bhi12g00508 508
12 16135322 16138837 - XM_039019818.1 Bhi12g00509 509
6 34748819 34751442 + BLOR17710 Blo06g01127 1127
6 34753504 34761267 - BLOR17711 Blo06g01128 1128
15 1731041 1734186 + BLOR06563 Blo15g00169 169
8 4169657 4189003 + Bma027324.1 Bma08g00301 301
8 4963882 4966332 - Bma027358.1 Bma08g00324 324
3 1762818 1765938 - Bpe011968.1 Bpe03g00123 123
7 15246947 15249887 - Bpe021777.1 Bpe07g00936 936
1 2948973 2955460 + CaPI482276_01g002640.1 Cam01g0264 264
1 4883904 4887982 + CaPI482276_01g004580.1 Cam01g0458 458
5 8742559 8749527 + CaPI482276_05g009730.1 Cam05g0973 973
5 8760622 8763726 + CaPI482276_05g009740.1 Cam05g0974 974
2 5886435 5888936 + Carg08409-RA Car02g00812 812
15 7858332 7880495 + Carg23183-RA Car15g01007 1007
18 11362511 11369470 + Carg22104-RA Car18g01156 1156
18 11372741 11375376 + Carg22105-RA Car18g01157 1157
1 2576987 2583592 + CcPI632755_01g002700.1 Cco01g0270 270
1 4582305 4586513 + CcPI632755_01g004690.1 Cco01g0469 469
1 4590514 4611131 - CcPI632755_01g004700.1 Cco01g0470 470
5 8513857 8520358 + CcPI632755_05g009760.1 Cco05g0976 976
5 8531224 8534374 + CcPI632755_05g009770.1 Cco05g0977 977
1 2554865 2561366 + CePI673135_01g002550.1 Cec01g0255 255
1 4608889 4612849 + CePI673135_01g004470.1 Cec01g0447 447
5 8498077 8505019 + CePI673135_05g009770.1 Cec05g0977 977
5 8516002 8519187 + CePI673135_05g009780.1 Cec05g0978 978
6 6950386 6972471 + Chy6G114780.1 Chy06g00950 950
6 6983859 6986465 + Chy6G114790.1 Chy06g00951 951
1 2568117 2574829 + ClG42_01g0026300.10 Clacu01g0263 263
1 4530833 4534890 + ClG42_01g0045700.10 Clacu01g0457 457
5 8453452 8461016 + ClG42_05g0096000.10 Clacu05g0960 960
5 8476826 8479985 + ClG42_05g0096100.10 Clacu05g0961 961
1 2621154 2632051 + ClCG01G002640.2 Cla01g00257 257
1 4707730 4711966 + ClCG01G004430.2 Cla01g00435 435
1 4714009 4736934 - ClCG01G004440.1 Cla01g00436 436
5 8713268 8720307 + ClCG05G008100.1 Cla05g00886 886
5 8738876 8742300 + ClCG05G008110.1 Cla05g00887 887
2 6366480 6369105 + CmaCh02G010690.1 Cma02g01069 1069
15 6963270 6985570 + CmaCh15G010960.1 Cma15g01096 1096
18 9746954 9753926 + CmaCh18G012490.1 Cma18g01249 1249
18 9757329 9760020 + CmaCh18G012500.1 Cma18g01250 1250
6 7202590 7212033 + MELO3C031814.2.1 Cme06g01005 1005
6 7225797 7230510 + MELO3C006916.2.1 Cme06g01006 1006
9 20537686 20540962 + MELO3C005468.2.1 Cme09g01553 1553
9 20542157 20560577 - MELO3C005470.2.1 Cme09g01554 1554
6 7189212 7192493 + PI0020359.1 Cmetu06g0984 984
2 6598707 6601211 + CmoCh02G010870.1 Cmo02g01087 1087
15 8051399 8074308 + CmoCh15G011540.1 Cmo15g01154 1154
18 12362457 12371921 + CmoCh18G012720.1 Cmo18g01272 1272
18 12375086 12377961 + CmoCh18G012730.1 Cmo18g01273 1273
1 2521076 2527786 + CmPI595203_01g002520.1 Cmu01g0252 252
1 4487651 4491727 + CmPI595203_01g004360.1 Cmu01g0436 436
5 8301266 8307803 + CmPI595203_05g009170.1 Cmu05g0917 917
5 8323605 8326765 + CmPI595203_05g009180.1 Cmu05g0918 918
5 3709499 3725969 - Conep05aG0089700.1 Cone5ag0871 871
14 412834 415207 + Conep14aG0008400.1 Cone14ag0081 81
5 3968437 3971141 - Cp4.1LG05g06570.1 Cpe05g00650 650
9 507970 510771 - Cp4.1LG09g00930.1 Cpe09g00087 87
9 513901 520915 - Cp4.1LG09g00940.1 Cpe09g00088 88
13 1977855 2000478 - Cp4.1LG13g02640.1 Cpe13g00255 255
5 9186909 9193497 + CrPI670011_05g010010.1 Cre05g1001 1001
5 9211482 9214753 + CrPI670011_05g010030.1 Cre05g1003 1003
9 39797403 39823365 + CrPI670011_09g020750.1 Cre09g2075 2075
9 39825611 39829686 - CrPI670011_09g020760.1 Cre09g2076 2076
9 41756466 41763131 - CrPI670011_09g022570.1 Cre09g2257 2257
3 12856960 12863551 + CsaV3_3G017180.1 Csa03g01718 1718
3 12874563 12878431 + CsaV3_3G017190.1 Csa03g01719 1719
5 3246324 3249925 + CsaV3_5G005030.1 Csa05g00503 503
5 3253872 3257459 + CsaV3_5G005040.1 Csa05g00504 504
6 51248804 51254042 - Hsped.06g06990.1 Hepe06g0699 699
7 1395325 1401162 - Hsped.07g01520.1 Hepe07g0152 152
11 247461 250005 + Lag0030666.1 Lac11g0028 28
12 541690 544869 + Maker00038850 Lcy12g0026 26
12 546142 576939 - Maker00038810 Lcy12g0027 27
5 20089302 20092696 - Lsi05G012190.1 Lsi05g01219 1219
5 20099371 20107597 - Lsi05G012200.1 Lsi05g01220 1220
10 912154 917150 - MC10g0127 Mch10g0150 150
1 64936238 64941474 - Sed0018370.1 Sed01g3583 3583
1 2102845 2108607 - Tan0014078.1 Tan01g0246 246
16 17263939 17278204 + Vvi16g694 Vvi16g694 694
16 17278297 17309401 - Vvi16g695 Vvi16g695 695
16 17352539 17355619 + Vvi16g696 Vvi16g696 696
16 17357369 17397188 - Vvi16g697 Vvi16g697 697
16 17423019 17425185 - Vvi16g698 Vvi16g698 698
16 17429550 17447121 - Vvi16g699 Vvi16g699 699
16 17447151 17448333 - Vvi16g700 Vvi16g700 700
16 17450060 17472817 - Vvi16g701 Vvi16g701 701
16 17473365 17494545 - Vvi16g702 Vvi16g702 702
16 17499472 17503681 - Vvi16g703 Vvi16g703 703
       

DecoBrowse