Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g916 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g917 . Blo16g00254 . . . Bpe13g00212 Bma06g00247 . . . . . . . . . . . . . . . . . . . . . . . . . Cone16ag0038 . . . . . . . . Bda11g01611 . . Bpe15g00201 Bma03g01273 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g918 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g919 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g920 . . . . . . . . Cmo13g00818 Cmo18g00195 . . . . . Cpe20g00323 . . . . . . . . . . . . . . . . Cone16ag0036 . . Lsi02g00479 Csa01g00941 Chy12g01188 Cme12g01610 . . . . . Bpe15g00204 Bma03g01272 . . . . Cma13g00787 Cma18g00218 Car13g00636 Car18g00213 Cpe09g00978 . Bhi08g01716 Tan05g2926 Cmetu12g0879 . Hepe07g2148 . . Cla03g00337 Cam03g0352 Cec03g0343 Cco03g0358 Clacu03g0353 Cmu03g0958 Cre03g0651 . . . .
Vvi17g921 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g922 . Blo16g00262 . . . . . Bma12g01280 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0314 Lsi02g00010 . . Cme12g02053 . . . . Bpe07g01085 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g923 . . . . . . . . Cmo13g01210 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g924 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g925 . . . . . . . . Cmo13g01210 . . . . . . Cpe20g00053 . . . . . . . . . . . . . . . . . . . Lsi02g00012 . . . Blo13g00117 . . . Bpe07g01083 . . . . . . . . Car13g00982 . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 2057 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
11 49792414 49794141 + Bda008493.1 Bda11g01611 1611
8 48158143 48162559 - XM_039037910.1 Bhi08g01716 1716
13 2350847 2360691 - BLOR05398 Blo13g00117 117
16 5893820 5895739 - BLOR07502 Blo16g00254 254
16 6130798 6132804 + BLOR07510 Blo16g00262 262
3 22606328 22608406 - Bma031028 Bma03g01272 1272
3 22661822 22663337 + Bma017743.1 Bma03g01273 1273
6 3284543 3286149 - Bma022875.1 Bma06g00247 247
12 45799646 45806104 + Bma008645.1 Bma12g01280 1280
7 16195120 16197539 - Bpe021923.1 Bpe07g01083 1083
7 16203304 16215260 + Bpe021925.1 Bpe07g01085 1085
13 10191820 10193737 + Bpe006334.1 Bpe13g00212 212
15 13091025 13091942 - Bpe001139.1 Bpe15g00201 201
15 13118083 13120123 + Bpe001142.1 Bpe15g00204 204
3 4672511 4679417 + CaPI482276_03g003520.1 Cam03g0352 352
13 7980982 7987048 + Carg07584-RA Car13g00636 636
13 9797560 9799769 - Carg04689-RA Car13g00982 982
18 1201641 1208637 + Carg06780-RA Car18g00213 213
3 3886926 3893894 + CcPI632755_03g003580.1 Cco03g0358 358
3 3832382 3839282 + CePI673135_03g003430.1 Cec03g0343 343
12 16699059 16702153 - Chy12G217880.1 Chy12g01188 1188
3 3990384 3996947 + ClG42_03g0035300.10 Clacu03g0353 353
3 3926798 3934085 + ClCG03G003570.2 Cla03g00337 337
13 6743824 6746560 + CmaCh13G007870.1 Cma13g00787 787
18 1180176 1186341 + CmaCh18G002180.1 Cma18g00218 218
12 23334093 23337802 - MELO3C002343.2.1 Cme12g01610 1610
12 26025840 26039535 - MELO3C001922.2.1 Cme12g02053 2053
12 2983481 2986525 + PI0006890.1 Cmetu12g0879 879
13 7664482 7667613 + CmoCh13G008180.1 Cmo13g00818 818
13 9503482 9525134 - CmoCh13G012100.1 Cmo13g01210 1210
18 1315327 1322275 + CmoCh18G001950.1 Cmo18g00195 195
3 4204395 4210957 + CmPI595203_03g009580.1 Cmu03g0958 958
16 213305 216452 - Conep16aG0003600.1 Cone16ag0036 36
16 223671 225167 + Conep16aG0003800.1 Cone16ag0038 38
19 2461288 2472151 + Conep19aG0032500.1 Cone19ag0314 314
9 8696190 8702683 - Cp4.1LG09g09880.1 Cpe09g00978 978
20 241688 256725 + Cp4.1LG20g00440.1 Cpe20g00053 53
20 1817586 1823779 - Cp4.1LG20g03340.1 Cpe20g00323 323
3 5408307 5414853 + CrPI670011_03g006510.1 Cre03g0651 651
1 5841093 5844148 + CsaV3_1G009410.1 Csa01g00941 941
7 65760514 65763281 - Hsped.07g21480.1 Hepe07g2148 2148
2 135255 136534 + Lsi02G000100.1 Lsi02g00010 10
2 150192 152790 + Lsi02G000120.1 Lsi02g00012 12
2 3994053 3997628 + Lsi02G004790.1 Lsi02g00479 479
5 81452860 81455569 + Tan0021352.1 Tan05g2926 2926
17 12553281 12553743 + Vvi17g916 Vvi17g916 916
17 12556744 12558304 - Vvi17g917 Vvi17g917 917
17 12706474 12706819 - Vvi17g918 Vvi17g918 918
17 12796713 12806173 + Vvi17g919 Vvi17g919 919
17 12806851 12811985 + Vvi17g920 Vvi17g920 920
17 12814373 12826449 - Vvi17g921 Vvi17g921 921
17 13182222 13232151 + Vvi17g922 Vvi17g922 922
17 13268007 13273528 + Vvi17g923 Vvi17g923 923
17 13288555 13288857 + Vvi17g924 Vvi17g924 924
17 13299950 13308122 - Vvi17g925 Vvi17g925 925
       

DecoBrowse