Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g66 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g67 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g68 . . . . . . . . . . . Cma20g00798 . Car20g00683 . . . . . . . . . . . . . . . . . . . . . Lsi10g00430 . Chy11g00322 . . . . . . . . . . . Cmo20g00806 . . . . Cpe16g00285 . Bhi10g01925 . . . . . . . . . . . . . . Csa02g01323 . .
Vvi3g69 . . . . . . . . . . . Cma20g00793 . . Sed05g2272 . Cpe15g00572 Bhi05g01767 Tan02g0735 Cmetu01g0608 . . . . . . . . . . . . . . . Lsi10g00435 . . Cme01g01310 . . . . . . Bma03g00581 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme11g00440
Vvi3g70 . . . . . . . . . . . Cma20g00786 . . Sed05g2270 . . Bhi05g01766 Tan02g0734 Cmetu01g0016 . . . . Cla02g00469 Cam02g0476 Cec02g0477 . Clacu02g0480 Cmu02g0475 Cre02g0807 . . . . Lsi10g00441 . . Cme01g01309 . Blo13g00529 . Bda14g00592 . . . . Sed01g0246 . Cmo20g00805 . . . . . Cpe05g01302 Bhi10g01918 Tan05g1219 Cmetu11g1650 . . . . . . . . . . . Lsi11g01159 Csa02g01325 . Cme11g00436
Vvi3g71 . . . . . . . . Cmo19g00722 . Cma02g00348 Cma20g00783 . . Sed05g2271 . . Bhi05g01765 Tan02g0733 Cmetu01g2428 . . . . . . . . . . . Cone12ag1204 Cone8ag1250 . . Lsi10g00442 . Chy11g00317 . . . . . . . Bma03g00582 . Sed01g0244 Cmo02g00346 . . . . . . . Bhi10g01917 Tan05g1217 Cmetu11g1982 . . . . . . . . . . . . Csa02g01327 . Cme11g00435
Vvi3g72 . . . . . . . . Cmo19g00723 . . . . . Sed05g2259 . . Bhi05g01764 Tan02g0724 Cmetu01g0370 . . . . Cla02g00468 Cam02g0475 Cec02g0476 . Clacu02g0479 Cmu02g0474 Cre02g0805 . . . . . . . Cme01g01307 . . . Bda14g00593 . . Bma03g00584 . Sed05g3570 . Cmo20g00798 . . . . . . Bhi10g01912 Tan05g1211 Cmetu11g0537 . . . . . . . . . . . Lsi11g01161 . . Cme11g00434
Vvi3g73 . . . . . . . . . . Cma02g00347 Cma20g00782 . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00445 . Chy11g00313 Cme01g01305 . . . Bda14g00595 . . . . . Cmo02g00343 Cmo20g00787 . . . . . . Bhi10g01911 Tan05g1210 . . . . . . . . . . . . Lsi11g01162 Csa02g01332 . Cme11g00431
Vvi3g74 . . . . . . . . . Cmo11g01711 . Cma20g00781 . . Sed04g3883 . . Bhi05g01763 Tan02g0723 Cmetu01g1922 . . . . Cla02g00467 Cam02g0474 Cec02g0474 . Clacu02g0478 Cmu02g0473 Cre02g0804 . Cone8ag1253 . . . Csa07g00059 . Cme01g01304 . . . . . . Bma03g00585 . . . Cmo20g00785 Cma11g01409 Cma19g00711 . . . . . . . . . . . . . . . . . . . Csa02g01334 . .
Vvi3g75 . . . . . . . . Cmo19g00724 . . Cma20g00780 . . . . . Bhi05g01762 Tan02g0722 Cmetu01g0683 . . . . Cla02g00466 Cam02g0473 Cec02g0472 . Clacu02g0476 Cmu02g0471 Cre02g0803 . . . . Lsi10g00451 Csa07g00060 Chy11g00312 Cme01g01303 . . . Bda14g00596 . . . . Sed05g3572 . . . . . . . . Bhi10g01910 Tan05g1209 Cmetu02g0248 . . . . . . . . . . . Lsi11g01163 . . .
   
Previous Page 245 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
14 4527455 4527730 - Bda027345.1 Bda14g00592 592
14 4528536 4528805 + Bda027346.1 Bda14g00593 593
14 4537319 4537591 - Bda027349.1 Bda14g00595 595
14 4539313 4539609 + Bda027350.1 Bda14g00596 596
5 56348125 56348762 + XM_039031972.1 Bhi05g01762 1762
5 56351324 56352103 + XM_039031327.1 Bhi05g01763 1763
5 56355999 56356471 + XM_039031328.1 Bhi05g01764 1764
5 56357302 56358251 + XM_039031324.1 Bhi05g01765 1765
5 56360547 56361035 + XM_039031326.1 Bhi05g01766 1766
5 56363580 56364131 + XM_039031329.1 Bhi05g01767 1767
10 47776663 47777294 - XM_039044635.1 Bhi10g01910 1910
10 47780808 47781551 - XM_039044636.1 Bhi10g01911 1911
10 47816497 47817122 - XM_039044907.1 Bhi10g01912 1912
10 47872794 47874053 - XM_039046050.1 Bhi10g01917 1917
10 47899130 47899770 - XM_039045216.1 Bhi10g01918 1918
10 47908531 47914931 + XM_039045212.1 Bhi10g01925 1925
13 26921015 26921308 - BLOR05810 Blo13g00529 529
3 4879012 4879299 - Bma016873.1 Bma03g00581 581
3 4881826 4882101 + Bma016874.1 Bma03g00582 582
3 4901965 4902237 - Bma016876.1 Bma03g00584 584
3 4902944 4903408 + Bma016877.1 Bma03g00585 585
2 5361822 5362121 + CaPI482276_02g004730.1 Cam02g0473 473
2 5366400 5366702 + CaPI482276_02g004740.1 Cam02g0474 474
2 5370001 5370291 + CaPI482276_02g004750.1 Cam02g0475 475
2 5375350 5375604 + CaPI482276_02g004760.1 Cam02g0476 476
20 3896200 3897630 + Carg25963-RA Car20g00683 683
2 4382433 4382735 + CePI673135_02g004720.1 Cec02g0472 472
2 4385853 4386152 + CePI673135_02g004740.1 Cec02g0474 474
2 4397957 4398247 + CePI673135_02g004760.1 Cec02g0476 476
2 4403322 4403576 + CePI673135_02g004770.1 Cec02g0477 477
11 2805775 2810765 - Chy11G188920.1 Chy11g00312 312
11 2812431 2813003 - Chy11G188930.1 Chy11g00313 313
11 2830380 2830940 - Chy11G188970.1 Chy11g00317 317
11 2854604 2856013 + Chy11G189020.1 Chy11g00322 322
2 4241417 4241716 + ClG42_02g0047600.10 Clacu02g0476 476
2 4245983 4246285 + ClG42_02g0047800.10 Clacu02g0478 478
2 4249565 4249855 + ClG42_02g0047900.10 Clacu02g0479 479
2 4254922 4255173 + ClG42_02g0048000.10 Clacu02g0480 480
2 4504731 4505975 + ClCG02G004414.1 Cla02g00466 466
2 4509111 4510544 + ClCG02G004416.1 Cla02g00467 467
2 4514014 4514304 + ClCG02G004417.1 Cla02g00468 468
2 4518803 4519622 + ClCG02G004418.1 Cla02g00469 469
2 1689572 1689865 - CmaCh02G003470.1 Cma02g00347 347
2 1690604 1692371 - CmaCh02G003480.1 Cma02g00348 348
11 9259371 9259673 + CmaCh11G014090.1 Cma11g01409 1409
19 7254417 7254719 - CmaCh19G007110.1 Cma19g00711 711
20 3691652 3691945 - CmaCh20G007800.1 Cma20g00780 780
20 3694490 3694783 - CmaCh20G007810.1 Cma20g00781 781
20 3696959 3697252 - CmaCh20G007820.1 Cma20g00782 782
20 3698263 3698556 - CmaCh20G007830.1 Cma20g00783 783
20 3707113 3709247 - CmaCh20G007860.1 Cma20g00786 786
20 3727585 3728787 - CmaCh20G007930.1 Cma20g00793 793
20 3735705 3737135 + CmaCh20G007980.1 Cma20g00798 798
1 16381485 16381781 + MELO3C013393.2.1 Cme01g01303 1303
1 16383429 16387568 + MELO3C013398.2.1 Cme01g01304 1304
1 16383432 16383891 + MELO3C013394.2.1 Cme01g01305 1305
1 16397794 16398298 + MELO3C013396.2.1 Cme01g01307 1307
1 16405300 16406463 + MELO3C013399.2.1 Cme01g01309 1309
1 16408469 16409064 + MELO3C013400.2.1 Cme01g01310 1310
11 4294266 4295308 - MELO3C020767.2.1 Cme11g00431 431
11 4300961 4301254 - MELO3C020764.2.1 Cme11g00434 434
11 4303376 4303975 - MELO3C020763.2.1 Cme11g00435 435
11 4306376 4306963 - MELO3C020762.2.1 Cme11g00436 436
11 4316265 4316844 - MELO3C020758.2.1 Cme11g00440 440
1 5525443 5525745 + PI0014946.1 Cmetu01g0016 16
1 5522946 5523215 + PI0014032.1 Cmetu01g0370 370
1 5468920 5469762 - PI0026214.1 Cmetu01g0608 608
1 5494072 5494594 - PI0007911.1 Cmetu01g0683 683
1 5502010 5502713 - PI0025880.1 Cmetu01g1922 1922
1 5533935 5534358 + PI0021846.1 Cmetu01g2428 2428
2 19570929 19572968 + PI0020480.1 Cmetu02g0248 248
11 28147531 28147823 + PI0015265.1 Cmetu11g0537 537
11 28115139 28115432 + PI0019585.1 Cmetu11g1650 1650
11 28128326 28128933 + PI0012350.1 Cmetu11g1982 1982
2 1745027 1745739 - CmoCh02G003430.1 Cmo02g00343 343
2 1748006 1748299 - CmoCh02G003460.1 Cmo02g00346 346
11 12148652 12148942 - CmoCh11G017110.1 Cmo11g01711 1711
19 7518944 7519246 - CmoCh19G007220.1 Cmo19g00722 722
19 7520560 7522235 - CmoCh19G007230.1 Cmo19g00723 723
19 7523419 7523721 - CmoCh19G007240.1 Cmo19g00724 724
20 3914783 3915076 - CmoCh20G007850.1 Cmo20g00785 785
20 3917958 3918251 - CmoCh20G007870.1 Cmo20g00787 787
20 3939239 3944478 - CmoCh20G007980.1 Cmo20g00798 798
20 3960077 3960370 - CmoCh20G008050.1 Cmo20g00805 805
20 3966710 3968140 + CmoCh20G008060.1 Cmo20g00806 806
2 4237405 4237704 + CmPI595203_02g004710.1 Cmu02g0471 471
2 4241971 4242273 + CmPI595203_02g004730.1 Cmu02g0473 473
2 4245552 4245842 + CmPI595203_02g004740.1 Cmu02g0474 474
2 4250910 4251161 + CmPI595203_02g004750.1 Cmu02g0475 475
8 10452182 10452733 + Conep08aG0128800.1 Cone8ag1250 1250
8 10458612 10458971 + Conep08aG0129100.1 Cone8ag1253 1253
12 9431644 9431874 + Conep12aG0124400.1 Cone12ag1204 1204
5 9100175 9100459 - Cp4.1LG05g13060.1 Cpe05g01302 1302
15 6539873 6552415 - Cp4.1LG15g05860.1 Cpe15g00572 572
16 4833015 4841077 - Cp4.1LG16g02920.1 Cpe16g00285 285
2 4816993 4817295 + CrPI670011_02g008030.1 Cre02g0803 803
2 4820088 4820387 + CrPI670011_02g008040.1 Cre02g0804 804
2 4824582 4825001 + CrPI670011_02g008050.1 Cre02g0805 805
2 4828301 4828591 + CrPI670011_02g008070.1 Cre02g0807 807
2 12887681 12889861 - CsaV3_2G015390.1 Csa02g01323 1323
2 12897717 12898010 + CsaV3_2G015410.1 Csa02g01325 1325
2 12910749 12912002 + CsaV3_2G015430.1 Csa02g01327 1327
2 12925325 12925945 + CsaV3_2G015480.1 Csa02g01332 1332
2 12929152 12929904 + CsaV3_2G015500.1 Csa02g01334 1334
7 651730 652020 - CsaV3_7G000590.1 Csa07g00059 59
7 658972 659406 - CsaV3_7G000600.1 Csa07g00060 60
10 6534116 6535546 - Lsi10G004300.1 Lsi10g00430 430
10 6560802 6561089 + Lsi10G004350.1 Lsi10g00435 435
10 6584580 6584873 + Lsi10G004410.1 Lsi10g00441 441
10 6587354 6587647 + Lsi10G004420.1 Lsi10g00442 442
10 6596141 6596434 + Lsi10G004450.1 Lsi10g00445 445
10 6623257 6623550 + Lsi10G004510.1 Lsi10g00451 451
11 20143690 20148937 - Lsi11G011590.1 Lsi11g01159 1159
11 20157289 20157591 - Lsi11G011610.1 Lsi11g01161 1161
11 20160190 20160492 - Lsi11G011620.1 Lsi11g01162 1162
11 20161653 20161955 - Lsi11G011630.1 Lsi11g01163 1163
1 1880847 1881362 - Sed0026469.1 Sed01g0244 244
1 1895992 1896490 - Sed0014273.1 Sed01g0246 246
4 47046872 47047381 - Sed0023478.1 Sed04g3883 3883
5 35254975 35255240 + Sed0023357.1 Sed05g2259 2259
5 35296992 35297452 + Sed0013608.1 Sed05g2270 2270
5 35301253 35301937 + Sed0025382.1 Sed05g2271 2271
5 35302516 35305910 + Sed0014782.1 Sed05g2272 2272
5 44268857 44271206 + Sed0023300.1 Sed05g3570 3570
5 44275494 44277947 + Sed0005952.1 Sed05g3572 3572
2 6758351 6762290 - Tan0003994.1 Tan02g0722 722
2 6763547 6763801 - Tan0006866.1 Tan02g0723 723
2 6765489 6765743 - Tan0018952.1 Tan02g0724 724
2 6837742 6838044 + Tan0006475.1 Tan02g0733 733
2 6839865 6840155 + Tan0004125.1 Tan02g0734 734
2 6843336 6849545 + Tan0019992.1 Tan02g0735 735
5 11930538 12005060 - Tan0018392.1 Tan05g1209 1209
5 12006650 12009136 - Tan0015596.1 Tan05g1210 1210
5 12014723 12017354 - Tan0021119.1 Tan05g1211 1211
5 12051276 12051828 - Tan0015811.1 Tan05g1217 1217
5 12066453 12067108 - Tan0014403.1 Tan05g1219 1219
3 835199 844911 - Vvi3g66 Vvi3g66 66
3 854294 855373 + Vvi3g67 Vvi3g67 67
3 856871 857987 - Vvi3g68 Vvi3g68 68
3 858885 859170 - Vvi3g69 Vvi3g69 69
3 864607 864874 + Vvi3g70 Vvi3g70 70
3 866405 867024 + Vvi3g71 Vvi3g71 71
3 867889 868156 + Vvi3g72 Vvi3g72 72
3 869577 872375 + Vvi3g73 Vvi3g73 73
3 883688 883976 - Vvi3g74 Vvi3g74 74
3 885396 885684 - Vvi3g75 Vvi3g75 75
       

DecoBrowse