Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g362 . . . . . . . . Cmo06g01119 . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0769 . . . . . . . . . . . . . . . . Cma06g01093 . Car06g00928 . Cpe08g00525 . . . . . . . . . . . . . . . . . . .
Vvi2g363 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g364 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g365 . . . . . . . . . . . . . . . Cpe14g00825 . Bhi11g00394 . . . . . . . . . . . . . . . . . Lsi07g01415 . . Cme06g02702 . . . . . . . . . . . Cma06g00659 . Car06g00589 Car16g00908 Cpe08g00851 . . . . . . . . . . . . . . . . Csa03g00374 . .
Vvi2g366 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g367 . . . . . . . . . . . Cma15g01410 . Car15g01272 . . Cpe05g00314 . . . . . . . . . . . . . . . Cone12ag0321 . . . . . . . . . . . . . . . . Cmo15g01482 . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g368 Blo02g01097 Blo03g00196 . . . . . . . . . . . . . . . Bhi11g00393 . . . Hepe06g1233 . . Cla10g00354 Cam10g0366 Cec10g0384 Cco10g0379 Clacu10g0370 Cmu10g1207 Cre10g0622 . . . . . . . . . . . . . . . . . . . Cma06g00707 . . Car16g00956 . . . . . . . . . . . . . . . . . . . .
Vvi2g369 . . . . . . . . Cmo06g00724 Cmo16g01046 . . . . . . . . . . . . . . Cla10g00353 . . . . . . . . . . . . . . . . . . . . . . . . . . Cma16g01003 Car06g00629 . Cpe08g00807 . . . . . . . . . . . . . . . . . Chy06g01938 .
Vvi2g370 . . . . . . Bma07g01638 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo19g00312 . . Bpe08g01477 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g371 . . . . . . . . . . . . . . . Cpe14g00833 . Bhi11g00374 . . . Hepe06g1217 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma06g00719 . . Car16g00968 . . . . . . . . . . . . . . . . . . . .
   
Previous Page 177 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
11 8779728 8783755 - XM_039047677.1 Bhi11g00374 374
11 9343251 9348936 + XM_039047922.1 Bhi11g00393 393
11 9351445 9354607 - XM_039047920.1 Bhi11g00394 394
2 41912902 41915777 + BLOR10827 Blo02g01097 1097
3 4640054 4644244 + BLOR11377 Blo03g00196 196
19 19971932 19980120 + BLOR09655 Blo19g00312 312
7 51982914 51986926 + Bma026935.2 Bma07g01638 1638
8 15497922 15501923 + Bpe023589.1 Bpe08g01477 1477
10 5917352 5922553 - CaPI482276_10g003660.1 Cam10g0366 366
6 3394239 3395837 - Carg23559-RA Car06g00589 589
6 3680438 3685420 + Carg21653-RA Car06g00629 629
6 7199534 7201695 + Carg24944-RA Car06g00928 928
15 9938874 9940950 + Carg20770-RA Car15g01272 1272
16 7434890 7436524 - Carg22346-RA Car16g00908 908
16 7986719 7991670 + Carg25227-RA Car16g00956 956
16 8080801 8083321 + Carg25215-RA Car16g00968 968
10 4439885 4445057 - CcPI632755_10g003790.1 Cco10g0379 379
10 4624283 4629471 - CePI673135_10g003840.1 Cec10g0384 384
6 23293966 23299165 + Chy6G124660.1 Chy06g01938 1938
10 4700869 4706054 - ClG42_10g0037000.10 Clacu10g0370 370
10 4711889 4717838 - ClCG10G003770.2 Cla10g00353 353
10 4718468 4724521 - ClCG10G003780.1 Cla10g00354 354
6 3268699 3270297 - CmaCh06G006590.1 Cma06g00659 659
6 3551820 3558222 + CmaCh06G007070.1 Cma06g00707 707
6 3632376 3636312 + CmaCh06G007190.1 Cma06g00719 719
6 7377007 7378645 + CmaCh06G010930.1 Cma06g01093 1093
15 8894565 8896980 + CmaCh15G014100.1 Cma15g01410 1410
16 7729059 7734656 + CmaCh16G010030.1 Cma16g01003 1003
6 34233542 34235799 + MELO3C014056.2.1 Cme06g02702 2702
6 3705325 3710757 + CmoCh06G007240.1 Cmo06g00724 724
6 8616327 8619355 + CmoCh06G011190.1 Cmo06g01119 1119
15 10052721 10054866 + CmoCh15G014820.1 Cmo15g01482 1482
16 7318961 7324320 + CmoCh16G010460.1 Cmo16g01046 1046
10 4841749 4847773 - CmPI595203_10g012070.1 Cmu10g1207 1207
6 3917373 3918400 + Conep06aG0079200.1 Cone6ag0769 769
12 1752595 1758451 + Conep12aG0033600.1 Cone12ag0321 321
5 1747256 1755286 - Cp4.1LG05g03710.1 Cpe05g00314 314
8 3403683 3405931 - Cp4.1LG08g01450.1 Cpe08g00525 525
8 6430393 6435594 - Cp4.1LG08g08120.1 Cpe08g00807 807
8 6729502 6731100 + Cp4.1LG08g08510.1 Cpe08g00851 851
14 6679421 6681316 - Cp4.1LG14g08250.1 Cpe14g00825 825
14 6767269 6770794 + Cp4.1LG14g08330.1 Cpe14g00833 833
10 5765331 5770503 - CrPI670011_10g006220.1 Cre10g0622 622
3 3164194 3167681 + CsaV3_3G003740.1 Csa03g00374 374
6 61728690 61733446 - Hsped.06g12170.1 Hepe06g1217 1217
6 62057624 62065355 - Hsped.06g12330.1 Hepe06g1233 1233
7 20682288 20684252 + Lsi07G014150.1 Lsi07g01415 1415
2 3496353 3498474 - Vvi2g362 Vvi2g362 362
2 3503766 3505105 + Vvi2g363 Vvi2g363 363
2 3511309 3512833 + Vvi2g364 Vvi2g364 364
2 3512887 3513635 + Vvi2g365 Vvi2g365 365
2 3513810 3521744 - Vvi2g366 Vvi2g366 366
2 3522058 3538402 - Vvi2g367 Vvi2g367 367
2 3558064 3566452 - Vvi2g368 Vvi2g368 368
2 3566592 3568188 - Vvi2g369 Vvi2g369 369
2 3569891 3585997 + Vvi2g370 Vvi2g370 370
2 3590881 3593551 + Vvi2g371 Vvi2g371 371
       

DecoBrowse