Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g881 . . . . . . . . Cmo04g01723 Cmo18g01187 . Cma18g01164 . Car18g01073 Sed06g1544 Cpe09g00165 . Bhi07g01588 Tan04g1099 Cmetu10g1298 Lac13g0302 Hepe10g1726 . . . . . . . . . Cone13ag0968 Cone19ag0958 . . Lsi04g00441 Csa05g02433 Chy10g00986 Cme10g00432 . Blo11g00763 Bda07g01461 . Bpe11g01634 . . . . Cmo04g02886 . Cma04g01644 . Car04g01685 . . . . . . . . . . . . . . . . . . . . .
Vvi1g882 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g883 Blo01g00423 Blo16g01124 Bda01g02165 Bda11g01226 Bpe13g01421 . . . Cmo04g01724 . . . . . Sed06g1543 Cpe09g00166 Cpe01g01455 Bhi07g01587 Tan04g1097 Cmetu10g1757 Lac13g0303 Hepe10g1727 . . Cla05g02457 Cam05g2643 Cec05g2676 Cco05g2713 Clacu05g2647 Cmu05g2501 Cre05g2614 Cone13ag0965 Cone19ag0957 Cone6ag0602 Cone9ag0607 . Csa05g02434 Chy10g00987 Cme10g00431 Blo06g00900 Blo11g00764 Bda07g01462 Bda11g01226 Bpe11g01635 Bpe02g02351 Bma01g00090 Bma06g00676 . Cmo04g02887 . Cma04g01645 . Car04g01686 Car15g00275 Cpe13g00943 . . . . . . . . . . . . . . . . . . .
Vvi1g884 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g885 . Blo16g01123 . . Bpe13g01420 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0601 Cone9ag0606 . . . . . . . . . . . Bma06g00677 . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g886 . Blo16g01122 . Bda11g01225 Bpe13g01419 Bpe10g00862 Bma14g01637 Bma15g00165 Cmo04g01725 Cmo18g01186 . Cma18g01163 . Car18g01072 . Cpe09g00167 Cpe01g01456 Bhi07g01584 Tan04g1095 . . . . . Cla05g02456 Cam05g2642 Cec05g2675 Cco05g2712 Clacu05g2645 Cmu05g2499 Cre05g2613 Cone13ag0964 Cone19ag0956 Cone6ag0600 Cone9ag0605 Lsi04g00439 Csa05g02435 Chy10g00988 Cme10g00430 Blo06g00901 . Bda07g01463 Bda11g01225 Bpe11g01636 . . Bma06g00678 . . . Cma04g01646 . Car04g01687 . . . . . . . . . . . . . . . . . . . . .
Vvi1g887 . . . . . . Bma14g01639 . Cmo04g01728 Cmo18g01184 . Cma18g01161 . Car18g01070 . Cpe09g00168 Cpe01g01457 Bhi07g01579 Tan04g1093 . Lac13g0308 . . . Cla05g02453 Cam05g2639 Cec05g2672 Cco05g2709 Clacu05g2642 Cmu05g2496 Cre05g2609 . . Cone6ag0598 Cone9ag0603 Lsi04g00436 Csa05g02438 . Cme10g00427 . Blo11g00768 Bda07g01465 . Bpe11g01638 . . . . . . Cma04g01649 . Car04g01689 . . . . . . . . . . . . . . . . . . . . .
Vvi1g888 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g889 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy09g00235 .
Vvi1g890 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma06g00679 . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 89 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
1 57562794 57563350 + Bda004503.1 Bda01g02165 2165
7 27172193 27174218 - Bda028293.1 Bda07g01461 1461
7 27187202 27188138 - Bda028294.1 Bda07g01462 1462
7 27244450 27245748 + Bda028298.1 Bda07g01463 1463
7 27277254 27279139 - Bda028300.1 Bda07g01465 1465
11 12616074 12617378 - Bda007731.1 Bda11g01225 1225
11 12642219 12642816 + Bda007732.1 Bda11g01226 1226
7 45181034 45183126 + XM_039037497.1 Bhi07g01579 1579
7 45226634 45229933 - XM_039036296.1 Bhi07g01584 1584
7 45265378 45266993 + XM_039037423.1 Bhi07g01587 1587
7 45286937 45290216 + XM_039036114.1 Bhi07g01588 1588
1 4779476 4780036 - BLOR00423 Blo01g00423 423
6 32245566 32246134 - BLOR17483 Blo06g00900 900
6 32264612 32265826 + BLOR17484 Blo06g00901 901
11 10603791 10605862 - BLOR03639 Blo11g00763 763
11 10638029 10639191 - BLOR03640 Blo11g00764 764
11 10926435 10930717 - BLOR03644 Blo11g00768 768
16 39717851 39723628 - BLOR21909 Blo16g01122 1122
16 39732468 39735015 + BLOR21910 Blo16g01123 1123
16 39740660 39741264 + BLOR21911 Blo16g01124 1124
1 1014436 1014992 - Bma000255.1 Bma01g00090 90
6 36355805 36356406 - Bma023649.1 Bma06g00676 676
6 36361024 36363269 - Bma023650.1 Bma06g00677 677
6 36408459 36409829 + Bma023654.1 Bma06g00678 678
6 36414739 36421901 - Bma023655.2 Bma06g00679 679
14 34644125 34645414 + Bma012350.1 Bma14g01637 1637
14 34669999 34671861 - Bma012353.1 Bma14g01639 1639
15 1734669 1735961 - Bma013146.1 Bma15g00165 165
2 23992659 23993183 + Bpe010169.1 Bpe02g02351 2351
10 14510626 14511474 + Bpe003167.1 Bpe10g00862 862
11 12457109 12459137 - Bpe004947.1 Bpe11g01634 1634
11 12468816 12469765 - Bpe004948.1 Bpe11g01635 1635
11 12485166 12486464 + Bpe004949.1 Bpe11g01636 1636
11 12516256 12518090 - Bpe004951.1 Bpe11g01638 1638
13 19430518 19431822 - Bpe011082.1 Bpe13g01419 1419
13 19440333 19442271 + Bpe011083.1 Bpe13g01420 1420
13 19448271 19448865 + Bpe011084.1 Bpe13g01421 1421
5 33859155 33860844 + CaPI482276_05g026390.1 Cam05g2639 2639
5 33896632 33900188 - CaPI482276_05g026420.1 Cam05g2642 2642
5 33921642 33923043 + CaPI482276_05g026430.1 Cam05g2643 2643
4 9688391 9691325 - Carg01714-RA Car04g01685 1685
4 9693509 9694066 - Carg01713-RA Car04g01686 1686
4 9699873 9702983 + Carg01712-RA Car04g01687 1687
4 9707847 9709680 - Carg01710-RA Car04g01689 1689
15 1499882 1500531 + Carg02256-RA Car15g00275 275
18 10868143 10869549 + Carg17260-RA Car18g01070 1070
18 10881129 10882391 - Carg17258-RA Car18g01072 1072
18 10892250 10897127 + Carg17257-RA Car18g01073 1073
5 34973915 34980070 + CcPI632755_05g027090.1 Cco05g2709 2709
5 35015205 35018193 - CcPI632755_05g027120.1 Cco05g2712 2712
5 35040256 35041656 + CcPI632755_05g027130.1 Cco05g2713 2713
5 37300068 37301777 + CePI673135_05g026720.1 Cec05g2672 2672
5 37337592 37340611 - CePI673135_05g026750.1 Cec05g2675 2675
5 37362492 37363896 + CePI673135_05g026760.1 Cec05g2676 2676
9 1942857 1944485 + Chy9G159510.1 Chy09g00235 235
10 15341173 15343779 - Chy10G181800.1 Chy10g00986 986
10 15348183 15349463 - Chy10G181810.1 Chy10g00987 987
10 15368150 15384539 + Chy10G181820.1 Chy10g00988 988
5 34063954 34065644 + ClG42_05g0264200.10 Clacu05g2642 2642
5 34101153 34102355 - ClG42_05g0264500.10 Clacu05g2645 2645
5 34124825 34126243 + ClG42_05g0264700.10 Clacu05g2647 2647
5 35952306 35954245 + ClCG05G024390.1 Cla05g02453 2453
5 35992258 35998426 - ClCG05G024420.1 Cla05g02456 2456
5 36021450 36022867 + ClCG05G024430.1 Cla05g02457 2457
4 8294767 8298562 - CmaCh04G016440.1 Cma04g01644 1644
4 8301679 8302407 - CmaCh04G016450.1 Cma04g01645 1645
4 8308596 8312614 + CmaCh04G016460.1 Cma04g01646 1646
4 8317424 8322416 - CmaCh04G016490.1 Cma04g01649 1649
18 9301742 9303639 + CmaCh18G011610.1 Cma18g01161 1161
18 9312458 9315481 - CmaCh18G011630.1 Cma18g01163 1163
18 9324568 9336161 + CmaCh18G011640.1 Cma18g01164 1164
10 2689054 2691102 + MELO3C012084.2.1 Cme10g00427 427
10 2714082 2715222 - MELO3C027345.2.1 Cme10g00430 430
10 2733864 2735333 + MELO3C012081.2.1 Cme10g00431 431
10 2738614 2742533 + MELO3C012080.2.1 Cme10g00432 432
10 19262836 19265835 - PI0012039.1 Cmetu10g1298 1298
10 19271518 19272902 - PI0015222.1 Cmetu10g1757 1757
4 8731610 8735339 - CmoCh04G017230.1 Cmo04g01723 1723
4 8736921 8737484 - CmoCh04G017240.1 Cmo04g01724 1724
4 8746455 8747759 + CmoCh04G017250.1 Cmo04g01725 1725
4 8752894 8755159 - CmoCh04G017280.1 Cmo04g01728 1728
4 20540974 20543906 - CmoCh04G028860.1 Cmo04g02886 2886
4 20548745 20553197 - CmoCh04G028870.1 Cmo04g02887 2887
18 11884468 11889269 + CmoCh18G011840.1 Cmo18g01184 1184
18 11907026 11909965 - CmoCh18G011860.1 Cmo18g01186 1186
18 11918942 11923306 + CmoCh18G011870.1 Cmo18g01187 1187
5 33801880 33803570 + CmPI595203_05g024960.1 Cmu05g2496 2496
5 33839049 33840251 - CmPI595203_05g024990.1 Cmu05g2499 2499
5 33862671 33864087 + CmPI595203_05g025010.1 Cmu05g2501 2501
6 2924005 2925133 + Conep06aG0061100.1 Cone6ag0598 598
6 2936946 2940489 - Conep06aG0061300.1 Cone6ag0600 600
6 2946659 2949438 + Conep06aG0061400.1 Cone6ag0601 601
6 2951485 2951865 + Conep06aG0061500.1 Cone6ag0602 602
9 2841997 2842407 + Conep09aG0061300.1 Cone9ag0603 603
9 2849544 2853065 - Conep09aG0061500.1 Cone9ag0605 605
9 2860253 2862937 + Conep09aG0061600.1 Cone9ag0606 606
9 2865608 2866008 + Conep09aG0061700.1 Cone9ag0607 607
13 8240073 8241422 - Conep13aG0099200.1 Cone13ag0964 964
13 8253690 8254120 + Conep13aG0099300.1 Cone13ag0965 965
13 8269314 8271117 + Conep13aG0099600.1 Cone13ag0968 968
19 7273766 7276518 - Conep19aG0098400.1 Cone19ag0956 956
19 7286094 7286681 + Conep19aG0098500.1 Cone19ag0957 957
19 7306273 7307889 + Conep19aG0098600.1 Cone19ag0958 958
1 8719977 8720325 - Cp4.1LG01g12710.1 Cpe01g01455 1455
1 8728819 8730929 + Cp4.1LG01g12630.1 Cpe01g01456 1456
1 8735129 8737456 - Cp4.1LG01g12570.1 Cpe01g01457 1457
9 963508 966685 - Cp4.1LG09g01660.1 Cpe09g00165 165
9 967519 967903 - Cp4.1LG09g01610.1 Cpe09g00166 166
9 976806 980178 + Cp4.1LG09g01530.1 Cpe09g00167 167
9 991486 993497 - Cp4.1LG09g01780.1 Cpe09g00168 168
13 7944500 7944995 - Cp4.1LG13g08560.1 Cpe13g00943 943
5 37162231 37163940 + CrPI670011_05g026090.1 Cre05g2609 2609
5 37199622 37202649 - CrPI670011_05g026130.1 Cre05g2613 2613
5 37224825 37226301 + CrPI670011_05g026140.1 Cre05g2614 2614
5 26303073 26310141 - CsaV3_5G032520.1 Csa05g02433 2433
5 26313766 26315796 - CsaV3_5G032530.1 Csa05g02434 2434
5 26332794 26338690 + CsaV3_5G032540.1 Csa05g02435 2435
5 26358459 26360894 - CsaV3_5G032570.1 Csa05g02438 2438
10 54064521 54067286 - Hsped.10g17260.1 Hepe10g1726 1726
10 54076227 54077430 - Hsped.10g17270.1 Hepe10g1727 1727
13 2141705 2144548 - Lag0040098.1 Lac13g0302 302
13 2148698 2149147 - Lag0040099.1 Lac13g0303 303
13 2203711 2206210 - Lag0040104.1 Lac13g0308 308
4 4147271 4149905 + Lsi04G004360.1 Lsi04g00436 436
4 4188912 4190821 - Lsi04G004390.1 Lsi04g00439 439
4 4227822 4230900 + Lsi04G004410.1 Lsi04g00441 441
6 40226144 40227203 + Sed0017506.1 Sed06g1543 1543
6 40249512 40252470 + Sed0004959.1 Sed06g1544 1544
4 9839210 9841694 + Tan0001980.1 Tan04g1093 1093
4 9948885 9952828 - Tan0016318.1 Tan04g1095 1095
4 9976285 9976667 + Tan0010150.1 Tan04g1097 1097
4 9994891 9997966 + Tan0008457.2 Tan04g1099 1099
1 11323606 11332468 - Vvi1g881 Vvi1g881 881
1 11383121 11384462 + Vvi1g882 Vvi1g882 882
1 11409314 11410477 - Vvi1g883 Vvi1g883 883
1 11410638 11411089 + Vvi1g884 Vvi1g884 884
1 11448689 11455844 - Vvi1g885 Vvi1g885 885
1 11464588 11467806 + Vvi1g886 Vvi1g886 886
1 11489163 11496595 - Vvi1g887 Vvi1g887 887
1 11514871 11528515 + Vvi1g888 Vvi1g888 888
1 11539989 11542757 + Vvi1g889 Vvi1g889 889
1 11542846 11577704 - Vvi1g890 Vvi1g890 890
       

DecoBrowse