Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g272 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g273 . . Bda06g01122 . . . . Bma14g00091 . . . . . . . Cpe14g01023 . . . . . . . . Cla10g00077 Cam10g0075 Cec10g0077 Cco10g0081 Clacu10g0075 Cmu10g0921 Cre10g0338 Cone8ag0582 . . . . Csa05g00148 . Cme06g02383 Blo03g00791 . . . . . . . . . . . . . Car16g01165 . . . . . . . . . . . . . . . . Lsi09g00122 . . .
Vvi2g274 . . Bda06g01126 . . . . . . Cmo16g01283 . Cma15g01333 . Car15g01198 . . . . . . . . . . . . . . . . . . . . . Lsi07g01105 . . . Blo03g00789 . . . . Bpe11g00380 . . . . Cmo15g01395 . Cma16g01237 . . . . . . . . . . . . . . . . . . . . . .
Vvi2g275 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g276 . . . . . . . . . . Cma02g00953 Cma15g01334 . . . . Cpe05g00761 . . . . . . . . . . . . . . Cone8ag0568 . . . . Csa05g00147 Chy09g01348 . . . . Bda09g00628 Bpe08g00912 . . . . Cmo02g00961 . . . . . . . Bhi12g00067 . . . . . Lcy12g1489 Cla01g00130 Cam01g0132 Cec01g0133 Cco01g0134 Clacu01g0128 Cmu01g0130 Cre09g2375 . . . Cme09g01896
Vvi2g277 . . . . . . Bma07g01046 Bma14g00089 Cmo06g00500 Cmo16g00647 . . . Car15g01205 . Cpe14g00507 . . . . . . . . Cla07g00776 Cam07g0833 Cec07g0888 Cco07g0865 Clacu07g0810 Cmu07g0816 Cre07g1170 . . . . . . . Cme07g01632 Blo03g00788 Blo19g00130 Bda07g00161 . Bpe08g00913 Bpe11g00381 . . . . . Cma06g00497 Cma16g00597 . . Cpe08g00992 . . . . . . . . . . . . . . . . Csa04g00592 Chy07g01218 .
Vvi2g278 . . . . . . Bma07g01048 . . . . . . Car15g01202 . . Cpe05g00759 . . . . . . . . . . . . . . . . . . . Csa05g00144 . . . Blo19g00129 Bda07g00162 Bda09g00627 Bpe08g00914 Bpe11g00382 . . . . . . . . . . . . . . . . . . Cla01g00127 Cam01g0129 Cec01g0130 Cco01g0131 Clacu01g0125 Cmu01g0127 Cre09g2378 Lsi09g00117 . . .
Vvi2g279 . . . . . . Bma07g01049 Bma14g00088 . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0571 . . . . . . Blo03g00787 Blo19g00125 Bda07g00163 Bda09g00625 Bpe08g00916 . . Bma12g00219 . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g280 . . . . Bpe05g00394 . . . . . . Cma15g01336 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma05g00547 . . . Cmo15g01397 . . . . . . Bhi12g00063 . . Lac11g1863 Hepe06g1415 . Lcy12g1487 . . . . . . . . . . Cme09g01898
Vvi2g281 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 168 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
6 39917782 39919082 + Bda033719 Bda06g01122 1122
6 40125434 40126800 + Bda022922.1 Bda06g01126 1126
7 1999022 1999963 + Bda025230.1 Bda07g00161 161
7 2009275 2009989 - Bda025231.1 Bda07g00162 162
7 2013095 2016087 - Bda025232.1 Bda07g00163 163
9 9170831 9174006 + Bda031252.1 Bda09g00625 625
9 9192138 9192933 + Bda031255.1 Bda09g00627 627
9 9251189 9254997 + Bda031258.1 Bda09g00628 628
12 1815464 1818995 - XM_039019378.1 Bhi12g00063 63
12 1875182 1878572 + XM_039051020.1 Bhi12g00067 67
3 32782927 32786967 + BLOR11968 Blo03g00787 787
3 32848880 32850067 - BLOR11969 Blo03g00788 788
3 32915484 32918961 + BLOR11970 Blo03g00789 789
3 32954546 32955867 + BLOR11972 Blo03g00791 791
19 3599135 3610405 + BLOR09468 Blo19g00125 125
19 3664590 3678499 + BLOR09472 Blo19g00129 129
19 3745824 3747005 - BLOR09473 Blo19g00130 130
5 29860561 29862300 - Bma021515.1 Bma05g00547 547
7 42169312 42170523 + Bma026242.1 Bma07g01046 1046
7 42217877 42218631 - Bma026244.1 Bma07g01048 1048
7 42224299 42227461 - Bma026245.1 Bma07g01049 1049
12 2908653 2910263 - Bma007108.1 Bma12g00219 219
14 1240008 1242986 + Bma010493.1 Bma14g00088 88
14 1257805 1258995 - Bma010494.1 Bma14g00089 89
14 1281302 1282342 + Bma010496.1 Bma14g00091 91
5 18230529 18232285 - Bpe017811.1 Bpe05g00394 394
8 11562276 11564551 - Bpe023035.1 Bpe08g00912 912
8 11582969 11584147 + Bpe023036.1 Bpe08g00913 913
8 11597424 11598177 - Bpe023037.1 Bpe08g00914 914
8 11605810 11606592 - Bpe023039.1 Bpe08g00916 916
11 2877000 2882784 - Bpe003754.1 Bpe11g00380 380
11 2890171 2891379 + Bpe003755.2 Bpe11g00381 381
11 2901587 2904197 - Bpe003756.1 Bpe11g00382 382
1 1629949 1631296 + CaPI482276_01g001290.1 Cam01g0129 129
1 1655284 1658200 + CaPI482276_01g001320.1 Cam01g0132 132
7 20827098 20828255 - CaPI482276_07g008330.1 Cam07g0833 833
10 2307340 2314860 - CaPI482276_10g000750.1 Cam10g0075 75
15 9316624 9318693 - Carg21322-RA Car15g01198 1198
15 9346714 9347905 - Carg21326-RA Car15g01202 1202
15 9362991 9363875 - Carg21329-RA Car15g01205 1205
16 9924520 9927530 + Carg19476-RA Car16g01165 1165
1 1194559 1195852 + CcPI632755_01g001310.1 Cco01g0131 131
1 1219440 1222306 + CcPI632755_01g001340.1 Cco01g0134 134
7 20059607 20060755 - CcPI632755_07g008650.1 Cco07g0865 865
10 736292 741298 - CcPI632755_10g000810.1 Cco10g0081 81
1 1223290 1224628 + CePI673135_01g001300.1 Cec01g0130 130
1 1246824 1249769 + CePI673135_01g001330.1 Cec01g0133 133
7 21955307 21956458 - CePI673135_07g008880.1 Cec07g0888 888
10 756897 761808 - CePI673135_10g000770.1 Cec10g0077 77
7 16986631 16987590 - Chy7G140480.1 Chy07g01218 1218
9 15327381 15329718 - Chy9G170640.1 Chy09g01348 1348
1 1241936 1243271 + ClG42_01g0012500.10 Clacu01g0125 125
1 1267082 1269984 + ClG42_01g0012800.10 Clacu01g0128 128
7 20536024 20537190 - ClG42_07g0081000.10 Clacu07g0810 810
10 1056299 1063482 - ClG42_10g0007500.10 Clacu10g0075 75
1 1220927 1222677 + ClCG01G001310.1 Cla01g00127 127
1 1247894 1251252 + ClCG01G001340.1 Cla01g00130 130
7 21656637 21658361 - ClCG07G008140.2 Cla07g00776 776
10 774341 781527 - ClCG10G000740.2 Cla10g00077 77
2 5666435 5670475 - CmaCh02G009530.1 Cma02g00953 953
6 2341282 2343357 + CmaCh06G004970.1 Cma06g00497 497
15 8357978 8360326 - CmaCh15G013330.1 Cma15g01333 1333
15 8365827 8374693 - CmaCh15G013340.1 Cma15g01334 1334
15 8384698 8387999 + CmaCh15G013360.1 Cma15g01336 1336
16 3085688 3086662 - CmaCh16G005970.1 Cma16g00597 597
16 9362199 9365013 + CmaCh16G012370.1 Cma16g01237 1237
6 31023243 31025545 - MELO3C031936.2.1 Cme06g02383 2383
7 22077795 22079992 - MELO3C016356.2.1 Cme07g01632 1632
9 23082887 23086139 - MELO3C005802.2.1 Cme09g01896 1896
9 23114118 23117544 + MELO3C005804.2.1 Cme09g01898 1898
2 5895463 5898934 - CmoCh02G009610.1 Cmo02g00961 961
6 2406026 2407883 + CmoCh06G005000.1 Cmo06g00500 500
15 9484322 9486642 - CmoCh15G013950.1 Cmo15g01395 1395
15 9508894 9514522 + CmoCh15G013970.1 Cmo15g01397 1397
16 3189084 3190016 - CmoCh16G006470.1 Cmo16g00647 647
16 9150583 9153466 + CmoCh16G012830.1 Cmo16g01283 1283
1 1186904 1188240 + CmPI595203_01g001270.1 Cmu01g0127 127
1 1211983 1214882 + CmPI595203_01g001300.1 Cmu01g0130 130
7 20749924 20751090 - CmPI595203_07g008160.1 Cmu07g0816 816
10 1199387 1206567 - CmPI595203_10g009210.1 Cmu10g0921 921
8 4426842 4428632 + Conep08aG0058900.1 Cone8ag0568 568
8 4835565 4837787 - Conep08aG0060300.1 Cone8ag0582 582
12 4194713 4198239 + Conep12aG0059200.1 Cone12ag0571 571
5 4695579 4698155 + Cp4.1LG05g07520.1 Cpe05g00759 759
5 4710513 4714175 + Cp4.1LG05g07510.1 Cpe05g00761 761
8 7710465 7711986 - Cp4.1LG08g10050.1 Cpe08g00992 992
14 3214566 3215552 - Cp4.1LG14g02110.1 Cpe14g00507 507
14 8621202 8624128 + Cp4.1LG14g10150.1 Cpe14g01023 1023
7 24085315 24086490 - CrPI670011_07g011700.1 Cre07g1170 1170
9 43076380 43079342 - CrPI670011_09g023750.1 Cre09g2375 2375
9 43111689 43113041 - CrPI670011_09g023780.1 Cre09g2378 2378
10 2179019 2183755 - CrPI670011_10g003380.1 Cre10g0338 338
4 3908314 3912965 + CsaV3_4G005920.1 Csa04g00592 592
5 794218 796446 + CsaV3_5G001440.1 Csa05g00144 144
5 813425 816735 + CsaV3_5G001470.1 Csa05g00147 147
5 825128 827971 + CsaV3_5G001480.1 Csa05g00148 148
6 64540349 64544486 - Hsped.06g14150.1 Hepe06g1415 1415
11 33599389 33601838 - Lag0032501.1 Lac11g1863 1863
12 34096723 34099807 - Maker00029441 Lcy12g1487 1487
12 34142835 34148152 + Maker00029456 Lcy12g1489 1489
7 16437375 16446406 - Lsi07G011050.1 Lsi07g01105 1105
9 1135869 1136857 + Lsi09G001170.1 Lsi09g00117 117
9 1179892 1183089 + Lsi09G001220.1 Lsi09g00122 122
2 2512149 2516229 + Vvi2g272 Vvi2g272 272
2 2524249 2527083 - Vvi2g273 Vvi2g273 273
2 2527134 2532638 - Vvi2g274 Vvi2g274 274
2 2536048 2537782 + Vvi2g275 Vvi2g275 275
2 2538266 2543503 - Vvi2g276 Vvi2g276 276
2 2549059 2551460 + Vvi2g277 Vvi2g277 277
2 2559584 2561332 - Vvi2g278 Vvi2g278 278
2 2569664 2576046 - Vvi2g279 Vvi2g279 279
2 2577442 2580032 - Vvi2g280 Vvi2g280 280
2 2582336 2582732 - Vvi2g281 Vvi2g281 281
       

DecoBrowse