Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g16 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g17 . . . . . . . . . . Cma10g00010 . Car10g00007 . Sed14g0033 . . Bhi02g00606 Tan09g2439 Cmetu02g1402 . . . . Cla06g01787 Cam06g1985 Cec06g2035 Cco06g2043 Clacu06g1942 Cmu06g1882 Cre06g2693 . . Cone13ag0267 Cone19ag0251 . . . . . . . . . . . . . Cmo10g00008 . . . . . . . . . . . . . . . . . . . . . Lsi06g01687 Csa01g00006 . Cme02g02116
Vvi17g18 . Blo16g00293 . . . Bpe13g00181 Bma06g00290 . . . Cma10g00011 Cma11g00006 Car10g00008 Car11g00005 . . Cpe04g01639 . . . . . . . . . . . . . . . . Cone13ag0266 Cone19ag0250 . . . . . . Bda11g01570 . . . . . . Cmo10g00009 Cmo11g00005 . . . . . Cpe18g00942 . . . . . . . . . . . . . . . . . .
Vvi17g19 . . . Bda15g00699 Bpe12g00456 . . . . . . . . . . Cpe20g00288 . Bhi02g00609 . . . . . . . . . . . . . . . . . Lsi02g00529 Csa01g00992 Chy12g01142 Cme12g01560 . . . . . . . Bma08g00282 Sed01g1537 . . . . Car13g00674 . . . Bhi08g01542 Tan05g3013 Cmetu12g1640 Lac10g0615 Hepe07g2080 . . Cla03g00381 Cam03g0400 Cec03g0386 Cco03g0401 Clacu03g0399 Cmu03g1004 Cre03g0696 . Csa01g00007 Chy02g02707 Cme02g02115
Vvi17g20 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0265 Cone19ag0248 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g21 . . . . . Bpe13g00182 Bma06g00286 . . Cmo18g00239 . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0264 . Lsi02g00528 Csa01g00991 Chy12g01143 Cme12g01561 . . Bda11g01572 . . . . . Sed01g1538 . . . Cma18g00291 . Car18g00251 Cpe09g00941 . Bhi08g01540 Tan05g3012 Cmetu12g0674 Lac10g0614 . . . Cla03g00379 Cam03g0399 Cec03g0385 Cco03g0400 Clacu03g0398 Cmu03g1003 Cre03g0695 . . . .
Vvi17g22 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g23 . Blo16g00291 . . . Bpe13g00183 Bma06g00285 . . . Cma10g00013 . Car10g00009 . Sed08g0101 . . Bhi02g00617 Tan09g2435 Cmetu02g1857 . Hepe09g0010 . . Cla06g01784 Cam06g1978 Cec06g2028 Cco06g2037 Clacu06g1936 Cmu06g1877 Cre06g2689 . . . Cone19ag0247 . . . . . . Bda11g01573 . . . . . . Cmo10g00010 . . . . . . Cpe18g00941 . . . . . . . . . . . . . . . Csa01g00008 Chy02g02706 Cme02g02114
Vvi17g24 . . . . . . . . . . Cma10g00015 . Car10g00010 . . . . . . . . . . . . . . . . . . . . Cone13ag0263 . . . . . . . . . . . . . . Cmo10g00012 . . . . . . Cpe18g00940 . . . . . . . . . . . . . . Lsi06g01685 . . .
Vvi17g25 . . Bda06g00707 . . . . Bma12g01097 . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0261 Cone19ag0246 . . . . . Blo15g00188 . . Bpe07g00909 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 1967 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
6 9740971 9750621 - Bda024007.1 Bda06g00707 707
11 48868183 48873408 - Bda008439.1 Bda11g01570 1570
11 48910715 48912567 - Bda008442.1 Bda11g01572 1572
11 48931462 48932334 - Bda008443.1 Bda11g01573 1573
15 10427168 10431633 + Bda012553.1 Bda15g00699 699
2 11636867 11637845 - XM_039024024.1 Bhi02g00606 606
2 11792367 11799855 - XM_039024796.1 Bhi02g00609 609
2 11969186 11970632 - XM_039024723.1 Bhi02g00617 617
8 44170862 44173168 - XM_039038771.1 Bhi08g01540 1540
8 44270266 44276012 + XM_039038840.1 Bhi08g01542 1542
15 1957705 1963033 - BLOR06582 Blo15g00188 188
16 7022368 7023660 + BLOR07539 Blo16g00291 291
16 7077974 7085825 + BLOR07541 Blo16g00293 293
6 4057849 4059138 + Bma022920.1 Bma06g00285 285
6 4066032 4067923 + Bma022921.1 Bma06g00286 286
6 4132807 4137113 + Bma022926.1 Bma06g00290 290
8 3865463 3870237 + Bma027304.1 Bma08g00282 282
12 43237100 43248412 + Bma008441.1 Bma12g01097 1097
7 15065008 15077861 + Bpe021750.2 Bpe07g00909 909
12 10284959 10289546 - Bpe005714.1 Bpe12g00456 456
13 9730917 9736200 - Bpe006301.1 Bpe13g00181 181
13 9742994 9744908 - Bpe006302.1 Bpe13g00182 182
13 9747173 9748238 - Bpe006303.1 Bpe13g00183 183
3 5122438 5124179 - CaPI482276_03g003990.1 Cam03g0399 399
3 5126758 5132343 + CaPI482276_03g004000.1 Cam03g0400 400
6 30574470 30575738 + CaPI482276_06g019780.1 Cam06g1978 1978
6 30592795 30593223 + CaPI482276_06g019850.1 Cam06g1985 1985
10 33353 33748 - Carg10239-RA Car10g00007 7
10 34808 41079 - Carg10240-RA Car10g00008 8
10 42944 44576 - Carg10241-RA Car10g00009 9
10 44516 55352 + Carg10242-RA Car10g00010 10
11 26947 32749 - Carg24563-RA Car11g00005 5
13 8191609 8198198 + Carg07624-RA Car13g00674 674
18 1456966 1460350 - Carg06818-RA Car18g00251 251
3 4349315 4351053 - CcPI632755_03g004000.1 Cco03g0400 400
3 4353556 4359095 + CcPI632755_03g004010.1 Cco03g0401 401
6 30332272 30333540 + CcPI632755_06g020370.1 Cco06g2037 2037
6 30343396 30351690 + CcPI632755_06g020430.1 Cco06g2043 2043
3 4306879 4308616 - CePI673135_03g003850.1 Cec03g0385 385
3 4310288 4316670 + CePI673135_03g003860.1 Cec03g0386 386
6 33417053 33418320 + CePI673135_06g020280.1 Cec06g2028 2028
6 33433079 33435893 + CePI673135_06g020350.1 Cec06g2035 2035
2 29894590 29895640 + Chy2G049730.1 Chy02g02706 2706
2 29896897 29904692 + Chy2G049740.1 Chy02g02707 2707
12 16356464 16361301 - Chy12G217420.1 Chy12g01142 1142
12 16362182 16364179 + Chy12G217430.1 Chy12g01143 1143
3 4438228 4439971 - ClG42_03g0039800.10 Clacu03g0398 398
3 4442436 4447889 + ClG42_03g0039900.10 Clacu03g0399 399
6 29610001 29611269 + ClG42_06g0193600.10 Clacu06g1936 1936
6 29626365 29628178 + ClG42_06g0194200.10 Clacu06g1942 1942
3 4399872 4402038 - ClCG03G004020.1 Cla03g00379 379
3 4404330 4410226 + ClCG03G004040.1 Cla03g00381 381
6 31275973 31277241 + ClCG06G018350.2 Cla06g01784 1784
6 31286507 31294181 + ClCG06G018370.1 Cla06g01787 1787
10 34680 35416 - CmaCh10G000100.1 Cma10g00010 10
10 35998 43608 - CmaCh10G000110.1 Cma10g00011 11
10 44352 45791 - CmaCh10G000130.1 Cma10g00013 13
10 46143 56828 + CmaCh10G000150.1 Cma10g00015 15
11 31149 36904 - CmaCh11G000060.1 Cma11g00006 6
18 1544490 1555246 + CmaCh18G002910.1 Cma18g00291 291
2 26899382 26900618 + MELO3C026160.2.1 Cme02g02114 2114
2 26901423 26906983 + MELO3C026159.2.1 Cme02g02115 2115
2 26908525 26909889 + MELO3C026158.2.1 Cme02g02116 2116
12 23004179 23009569 - MELO3C002386.2.1 Cme12g01560 1560
12 23010534 23012754 + MELO3C035737.2.1 Cme12g01561 1561
2 25215074 25219235 + PI0009555.1 Cmetu02g1402 1402
2 25205949 25206997 + PI0021837.1 Cmetu02g1857 1857
12 3381726 3383756 - PI0028251.1 Cmetu12g0674 674
12 3384990 3389808 + PI0024329.1 Cmetu12g1640 1640
10 72992 74712 - CmoCh10G000080.1 Cmo10g00008 8
10 74859 82054 - CmoCh10G000090.1 Cmo10g00009 9
10 82935 84661 - CmoCh10G000100.1 Cmo10g00010 10
10 92496 94833 + CmoCh10G000120.1 Cmo10g00012 12
11 24044 29754 - CmoCh11G000050.1 Cmo11g00005 5
18 1583974 1585869 - CmoCh18G002390.1 Cmo18g00239 239
3 4653133 4654097 - CmPI595203_03g010030.1 Cmu03g1003 1003
3 4656425 4661872 + CmPI595203_03g010040.1 Cmu03g1004 1004
6 29520551 29521819 + CmPI595203_06g018770.1 Cmu06g1877 1877
6 29536951 29538760 + CmPI595203_06g018820.1 Cmu06g1882 1882
13 1795311 1800850 - Conep13aG0027200.1 Cone13ag0261 261
13 1830525 1840385 - Conep13aG0027400.1 Cone13ag0263 263
13 1842580 1845092 + Conep13aG0027500.1 Cone13ag0264 264
13 1848616 1855058 + Conep13aG0027600.1 Cone13ag0265 265
13 1864543 1870318 + Conep13aG0027700.1 Cone13ag0266 266
13 1873790 1874988 + Conep13aG0027800.1 Cone13ag0267 267
19 1615733 1621463 - Conep19aG0025300.1 Cone19ag0246 246
19 1624511 1626137 + Conep19aG0025400.1 Cone19ag0247 247
19 1630154 1636799 + Conep19aG0025500.1 Cone19ag0248 248
19 1644555 1652210 + Conep19aG0025700.1 Cone19ag0250 250
19 1658840 1660184 + Conep19aG0025800.1 Cone19ag0251 251
4 12666023 12671795 + Cp4.1LG04g16270.1 Cpe04g01639 1639
9 8429865 8432228 + Cp4.1LG09g09290.1 Cpe09g00941 941
18 8280957 8294202 - Cp4.1LG18g09450.1 Cpe18g00940 940
18 8294040 8295219 + Cp4.1LG18g09280.1 Cpe18g00941 941
18 8296347 8303702 + Cp4.1LG18g09340.1 Cpe18g00942 942
20 1594393 1600678 - Cp4.1LG20g02960.1 Cpe20g00288 288
3 5866564 5868303 - CrPI670011_03g006950.1 Cre03g0695 695
3 5870832 5876361 + CrPI670011_03g006960.1 Cre03g0696 696
6 34358098 34359361 + CrPI670011_06g026890.1 Cre06g2689 2689
6 34380285 34380713 + CrPI670011_06g026930.1 Cre06g2693 2693
1 57226 59022 - CsaV3_1G000060.1 Csa01g00006 6
1 59513 63138 - CsaV3_1G000070.1 Csa01g00007 7
1 63737 67092 - CsaV3_1G000080.1 Csa01g00008 8
1 6178355 6181041 - CsaV3_1G009910.1 Csa01g00991 991
1 6181754 6188199 + CsaV3_1G009920.1 Csa01g00992 992
7 65065689 65073078 - Hsped.07g20800.1 Hepe07g2080 2080
9 109918 110983 - Hsped.09g00100.1 Hepe09g0010 10
10 4715874 4717710 - Lag0024659.1 Lac10g0614 614
10 4731761 4737949 + Lag0024660.1 Lac10g0615 615
2 4586481 4588701 - Lsi02G005280.1 Lsi02g00528 528
2 4592085 4598014 + Lsi02G005290.1 Lsi02g00529 529
6 27034333 27054630 - Lsi06G016850.1 Lsi06g01685 1685
6 27067740 27076613 + Lsi06G016870.1 Lsi06g01687 1687
1 11109767 11115847 - Sed0008211.2 Sed01g1537 1537
1 11116667 11118899 + Sed0017197.1 Sed01g1538 1538
8 625448 627543 + Sed0026594.1 Sed08g0101 101
14 409978 410769 - Sed0013533.1 Sed14g0033 33
5 82032539 82034903 - Tan0009927.1 Tan05g3012 3012
5 82041761 82050436 + Tan0005968.1 Tan05g3013 3013
9 73909504 73911332 + Tan0011052.1 Tan09g2435 2435
9 73955219 73956066 + Tan0019973.1 Tan09g2439 2439
17 102557 106388 + Vvi17g16 Vvi17g16 16
17 108832 110748 - Vvi17g17 Vvi17g17 17
17 116407 141670 - Vvi17g18 Vvi17g18 18
17 144883 156662 - Vvi17g19 Vvi17g19 19
17 157788 167943 - Vvi17g20 Vvi17g20 20
17 175745 178059 - Vvi17g21 Vvi17g21 21
17 179330 181160 + Vvi17g22 Vvi17g22 22
17 181360 183535 - Vvi17g23 Vvi17g23 23
17 184742 190323 + Vvi17g24 Vvi17g24 24
17 191902 199918 + Vvi17g25 Vvi17g25 25
       

DecoBrowse