Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g106 . . Bda06g00726 . Bpe12g00480 . . Bma12g01082 . . Cma10g00061 Cma11g00032 Car10g00048 Car11g00030 . . Cpe04g01616 Bhi02g00518 . . . . . . Cla06g01742 Cam06g1932 Cec06g1982 Cco06g1986 Clacu06g1888 Cmu06g1830 Cre06g2645 . . Cone13ag0222 Cone19ag0208 . . . . . Blo15g00207 . . Bpe07g00891 . . Bma08g00253 . Cmo10g00055 Cmo11g00034 . . . . . Cpe18g00905 . . . . . . . . . . . . . . Lsi06g01642 Csa01g00055 Chy02g02663 Cme02g02066
Vvi17g107 . . . . Bpe12g00481 . . . . Cmo18g00220 . . . . . . . . . . . . . . . . . . . . . Cone2ag0977 . . . Lsi02g00505 Csa01g00966 Chy12g01167 Cme12g01589 . . . . . . . . Sed01g1561 . . . Cma18g00316 . Car18g00231 Cpe09g00959 . Bhi08g01489 Tan05g2966 Cmetu12g0290 Lac10g0585 Hepe07g2111 . . Cla03g00355 Cam03g0374 Cec03g0361 Cco03g0377 Clacu03g0373 Cmu03g0979 Cre03g0671 . . . .
Vvi17g108 . Blo16g00267 . . . Bpe13g00202 Bma06g00258 . Cmo13g00837 Cmo18g00219 . . . . . Cpe20g00306 . . . . . . . . . . . . . . . Cone2ag0976 . . . Lsi02g00504 Csa01g00965 Chy12g01168 Cme12g01590 . . Bda11g01600 . . . . . Sed08g2435 . . Cma13g00805 Cma18g00317 Car13g00653 Car18g00230 Cpe09g00960 . Bhi08g01488 Tan05g2965 Cmetu12g0210 Lac10g0584 Hepe07g2110 . . Cla03g00354 Cam03g0373 Cec03g0360 Cco03g0376 Clacu03g0372 Cmu03g0978 Cre03g0670 . . . .
Vvi17g109 . . . . . . . . . Cmo18g00217 . . . . . . . . . . . . . . . . . . . . . Cone2ag0974 . . . Lsi02g00501 Csa01g00962 Chy12g01600 Cme12g01778 . . . Bda14g01363 . Bpe15g00218 . . . . . . Cma18g00109 . Car18g00100 Cpe09g01082 . . . . . . . . . . . . . . . . Csa01g00489 . .
Vvi17g110 . . . . . . . . . . . . . . . . . Bhi02g00517 . . . . . . . . . . . . . . Cone16ag0017 . . . . . . . . . . . Bpe15g00217 . Bma08g00130 . Cmo10g00057 . . . . . . Cpe18g00903 . . . . . . . . . . . . . . . . . Cme02g02064
Vvi17g111 . . . . . . . . . . . Cma11g00034 . Car11g00031 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo10g00058 Cmo11g00036 . . . . . . . . . . . . . . . . . . . . . . . Cme02g02063
Vvi17g112 Blo04g00867 . . . . . Bma06g00081 . . . Cma10g00063 . Car10g00050 . . . . Bhi02g00516 . . . . . . Cla06g01740 Cam06g1930 Cec06g1980 Cco06g1984 Clacu06g1886 Cmu06g1828 Cre06g2643 . Cone16ag0269 . . . . . . . . . Bda14g01365 . . Bma03g01255 . . . . . . . . . . . . . . . . . Cla04g00983 Cam04g1023 Cec04g1147 Cco04g1211 Clacu04g1052 Cmu04g1039 Cre04g1093 Lsi06g01639 Csa01g00058 Chy02g02661 .
Vvi17g113 . . . . Bpe12g00482 . . . . . Cma10g00064 . Car10g00052 . Sed08g0031 . Cpe04g01615 Bhi02g00515 Tan09g2371 Cmetu02g0530 . . . . Cla06g01739 Cam06g1929 Cec06g1979 Cco06g1983 Clacu06g1885 Cmu06g1827 Cre06g2642 . . . Cone19ag0368 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa01g00059 Chy02g02660 .
Vvi17g114 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda14g01152 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g115 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone2ag0972 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 1976 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
6 9938173 9938607 - Bda024028.1 Bda06g00726 726
11 49592764 49598122 - Bda033158 Bda11g01600 1600
14 10700030 10701879 - Bda027997.1 Bda14g01152 1152
14 15986131 15988942 + Bda011062.1 Bda14g01363 1363
14 16018082 16022019 + Bda011065.1 Bda14g01365 1365
2 9905309 9910919 + XM_039023843.1 Bhi02g00515 515
2 9911855 9919188 - XM_039022487.1 Bhi02g00516 516
2 9911855 9919188 - XM_039022486.1 Bhi02g00517 517
2 9955995 9957071 + XM_039023000.1 Bhi02g00518 518
8 43260958 43268459 + XM_039039456.1 Bhi08g01488 1488
8 43269501 43273210 - XM_039039101.1 Bhi08g01489 1489
4 9547207 9549115 - BLOR13779 Blo04g00867 867
15 2133134 2135575 - BLOR06601 Blo15g00207 207
16 6296597 6307067 + BLOR07515 Blo16g00267 267
3 21072425 21076317 + Bma017717.1 Bma03g01255 1255
6 1282980 1289514 - Bma022698.1 Bma06g00081 81
6 3565203 3570479 + Bma022889.1 Bma06g00258 258
8 1711348 1715709 + Bma027136.1 Bma08g00130 130
8 3228300 3228722 - Bma027270.1 Bma08g00253 253
12 43118488 43118922 + Bma008429.1 Bma12g01082 1082
7 14969061 14969495 + Bpe021732.1 Bpe07g00891 891
12 10565123 10565533 - Bpe005742.1 Bpe12g00480 480
12 10590986 10594761 + Bpe005743.1 Bpe12g00481 481
12 10641256 10644851 - Bpe005745.1 Bpe12g00482 482
13 10008754 10015396 - Bpe006324.1 Bpe13g00202 202
15 13298338 13302255 - Bpe001153.1 Bpe15g00217 217
15 13308164 13310955 - Bpe001154.1 Bpe15g00218 218
3 4867167 4873356 + CaPI482276_03g003730.1 Cam03g0373 373
3 4874413 4877148 - CaPI482276_03g003740.1 Cam03g0374 374
4 24403136 24407961 + CaPI482276_04g010230.1 Cam04g1023 1023
6 30246266 30253319 + CaPI482276_06g019290.1 Cam06g1929 1929
6 30253341 30260129 - CaPI482276_06g019300.1 Cam06g1930 1930
6 30285377 30289804 + CaPI482276_06g019320.1 Cam06g1932 1932
10 211520 212008 - Carg10280-RA Car10g00048 48
10 225342 230473 + Carg10282-RA Car10g00050 50
10 234215 235284 - Carg10284-RA Car10g00052 52
11 157303 157803 - Carg20168-RA Car11g00030 30
11 164847 170251 - Carg20169-RA Car11g00031 31
13 8080731 8088181 + Carg07603-RA Car13g00653 653
18 539090 543697 - Carg06665-RA Car18g00100 100
18 1318633 1326594 + Carg06797-RA Car18g00230 230
18 1326170 1329558 - Carg06798-RA Car18g00231 231
3 4092383 4098362 + CcPI632755_03g003760.1 Cco03g0376 376
3 4099415 4103876 - CcPI632755_03g003770.1 Cco03g0377 377
4 27525276 27530168 + CcPI632755_04g012110.1 Cco04g1211 1211
6 29985559 29992506 + CcPI632755_06g019830.1 Cco06g1983 1983
6 29992528 30001278 - CcPI632755_06g019840.1 Cco06g1984 1984
6 30027668 30028183 + CcPI632755_06g019860.1 Cco06g1986 1986
3 4034175 4040235 + CePI673135_03g003600.1 Cec03g0360 360
3 4041288 4045671 - CePI673135_03g003610.1 Cec03g0361 361
4 31080771 31085622 + CePI673135_04g011470.1 Cec04g1147 1147
6 33059018 33070157 + CePI673135_06g019790.1 Cec06g1979 1979
6 33070179 33076678 - CePI673135_06g019800.1 Cec06g1980 1980
6 33104805 33105320 + CePI673135_06g019820.1 Cec06g1982 1982
2 29610441 29616569 + Chy2G049270.1 Chy02g02660 2660
2 29618102 29625510 - Chy2G049280.1 Chy02g02661 2661
2 29640021 29640532 + Chy2G049300.1 Chy02g02663 2663
12 16550230 16553135 + Chy12G217670.1 Chy12g01167 1167
12 16554001 16560351 - Chy12G217680.1 Chy12g01168 1168
12 19550025 19557158 + Chy12G222000.1 Chy12g01600 1600
3 4182659 4188807 + ClG42_03g0037200.10 Clacu03g0372 372
3 4189868 4194090 - ClG42_03g0037300.10 Clacu03g0373 373
4 24772221 24776986 + ClG42_04g0105200.10 Clacu04g1052 1052
6 29297053 29304104 + ClG42_06g0188500.10 Clacu06g1885 1885
6 29304126 29310917 - ClG42_06g0188600.10 Clacu06g1886 1886
6 29336148 29336591 + ClG42_06g0188800.10 Clacu06g1888 1888
3 4126078 4133029 + ClCG03G003760.1 Cla03g00354 354
3 4133582 4138348 - ClCG03G003770.1 Cla03g00355 355
4 24950234 24955247 + ClCG04G009980.1 Cla04g00983 983
6 30940653 30945441 + ClCG06G017860.2 Cla06g01739 1739
6 30947760 30954536 - ClCG06G017870.2 Cla06g01740 1740
6 30979089 30979604 + ClCG06G017900.1 Cla06g01742 1742
10 227129 227641 - CmaCh10G000610.1 Cma10g00061 61
10 236726 243198 + CmaCh10G000630.1 Cma10g00063 63
10 242689 248326 - CmaCh10G000640.1 Cma10g00064 64
11 148110 148610 - CmaCh11G000320.1 Cma11g00032 32
11 155709 161030 - CmaCh11G000340.1 Cma11g00034 34
13 6838153 6846095 + CmaCh13G008050.1 Cma13g00805 805
18 534850 539480 - CmaCh18G001090.1 Cma18g00109 109
18 1680816 1684413 + CmaCh18G003160.1 Cma18g00316 316
18 1683788 1692935 - CmaCh18G003170.1 Cma18g00317 317
2 26604917 26609605 + MELO3C026209.2.1 Cme02g02063 2063
2 26611669 26619222 - MELO3C026208.2.1 Cme02g02064 2064
2 26634850 26635743 + MELO3C026206.2.1 Cme02g02066 2066
12 23186117 23189284 + MELO3C002362.2.1 Cme12g01589 1589
12 23189619 23195866 - MELO3C002361.2.1 Cme12g01590 1590
12 24361266 24366689 + MELO3C002182.2.1 Cme12g01778 1778
2 24910869 24915806 + PI0023489.1 Cmetu02g0530 530
12 3149123 3156084 + PI0001758.1 Cmetu12g0210 210
12 3156373 3159437 - PI0015636.1 Cmetu12g0290 290
10 258002 258511 - CmoCh10G000550.1 Cmo10g00055 55
10 268554 275077 + CmoCh10G000570.1 Cmo10g00057 57
10 277174 279298 - CmoCh10G000580.1 Cmo10g00058 58
11 143200 143700 - CmoCh11G000340.1 Cmo11g00034 34
11 148956 156118 - CmoCh11G000360.1 Cmo11g00036 36
13 7768667 7776091 + CmoCh13G008370.1 Cmo13g00837 837
18 1414260 1418488 - CmoCh18G002170.1 Cmo18g00217 217
18 1436695 1443701 + CmoCh18G002190.1 Cmo18g00219 219
18 1443877 1447674 - CmoCh18G002200.1 Cmo18g00220 220
3 4396700 4402844 + CmPI595203_03g009780.1 Cmu03g0978 978
3 4403905 4406516 - CmPI595203_03g009790.1 Cmu03g0979 979
4 24948976 24953717 + CmPI595203_04g010390.1 Cmu04g1039 1039
6 29196501 29207592 + CmPI595203_06g018270.1 Cmu06g1827 1827
6 29207614 29214390 - CmPI595203_06g018280.1 Cmu06g1828 1828
6 29239031 29239546 + CmPI595203_06g018300.1 Cmu06g1830 1830
2 35233320 35235269 - Conep02aG0200600.1 Cone2ag0972 972
2 35239040 35240683 - Conep02aG0200800.1 Cone2ag0974 974
2 35247596 35254280 + Conep02aG0201000.1 Cone2ag0976 976
2 35254373 35256313 - Conep02aG0201100.1 Cone2ag0977 977
13 1446385 1447181 + Conep13aG0022800.1 Cone13ag0222 222
16 127397 133446 + Conep16aG0001700.1 Cone16ag0017 17
16 3005547 3018655 - Conep16aG0261800.1 Cone16ag0269 269
19 1319853 1320871 + Conep19aG0021400.1 Cone19ag0208 208
19 3118052 3123895 - Conep19aG0038100.1 Cone19ag0368 368
4 12540529 12546838 + Cp4.1LG04g16080.1 Cpe04g01615 1615
4 12553022 12553522 + Cp4.1LG04g16030.1 Cpe04g01616 1616
9 8571308 8575266 + Cp4.1LG09g09570.1 Cpe09g00959 959
9 8575118 8581580 - Cp4.1LG09g09690.1 Cpe09g00960 960
9 9369386 9374168 + Cp4.1LG09g10850.1 Cpe09g01082 1082
18 8097094 8103753 - Cp4.1LG18g09210.1 Cpe18g00903 903
18 8115128 8115637 + Cp4.1LG18g09050.1 Cpe18g00905 905
20 1712984 1720400 - Cp4.1LG20g03110.1 Cpe20g00306 306
3 5606493 5612627 + CrPI670011_03g006700.1 Cre03g0670 670
3 5613686 5618209 - CrPI670011_03g006710.1 Cre03g0671 671
4 29613590 29618417 + CrPI670011_04g010930.1 Cre04g1093 1093
6 34029993 34036994 + CrPI670011_06g026420.1 Cre06g2642 2642
6 34037016 34043884 - CrPI670011_06g026430.1 Cre06g2643 2643
6 34069804 34070319 + CrPI670011_06g026450.1 Cre06g2645 2645
1 310653 319106 - CsaV3_1G000550.1 Csa01g00055 55
1 333631 341234 + CsaV3_1G000580.1 Csa01g00058 58
1 338572 349281 - CsaV3_1G000590.1 Csa01g00059 59
1 3182830 3217402 - CsaV3_1G004890.1 Csa01g00489 489
1 5963526 5966271 - CsaV3_1G009620.1 Csa01g00962 962
1 5990619 5997699 + CsaV3_1G009650.1 Csa01g00965 965
1 5997883 6001994 - CsaV3_1G009660.1 Csa01g00966 966
7 65435454 65442667 + Hsped.07g21100.1 Hepe07g2110 2110
7 65443314 65446215 - Hsped.07g21110.1 Hepe07g2111 2111
10 4502688 4509797 + Lag0024629.1 Lac10g0584 584
10 4511472 4514072 - Lag0024630.1 Lac10g0585 585
2 4252025 4254761 - Lsi02G005010.1 Lsi02g00501 501
2 4288632 4297222 + Lsi02G005040.1 Lsi02g00504 504
2 4297530 4300863 - Lsi02G005050.1 Lsi02g00505 505
6 26690712 26698194 - Lsi06G016390.1 Lsi06g01639 1639
6 26727354 26727869 + Lsi06G016420.1 Lsi06g01642 1642
1 11324234 11342034 + Sed0017169.1 Sed01g1561 1561
8 138652 143218 - Sed0005313.1 Sed08g0031 31
8 37380352 37388259 - Sed0010085.2 Sed08g2435 2435
5 81723734 81729785 + Tan0012992.2 Tan05g2965 2965
5 81730253 81732998 - Tan0019420.1 Tan05g2966 2966
9 73428016 73432852 + Tan0013333.1 Tan09g2371 2371
17 962147 964124 - Vvi17g106 Vvi17g106 106
17 967650 972345 + Vvi17g107 Vvi17g107 107
17 972995 979490 - Vvi17g108 Vvi17g108 108
17 979961 990944 + Vvi17g109 Vvi17g109 109
17 992519 998342 + Vvi17g110 Vvi17g110 110
17 998658 1003556 - Vvi17g111 Vvi17g111 111
17 1004067 1010002 + Vvi17g112 Vvi17g112 112
17 1010132 1017233 - Vvi17g113 Vvi17g113 113
17 1017856 1022127 + Vvi17g114 Vvi17g114 114
17 1023041 1025124 + Vvi17g115 Vvi17g115 115
       

DecoBrowse