Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g122 . Blo12g01021 Bda01g00632 Bda03g00135 . Bpe02g00500 . Bma01g02204 . Cmo12g00593 . . . . Sed08g1787 Cpe07g00569 . Bhi04g01490 Tan02g1608 Cmetu03g1951 . Hepe08g1409 . Lcy13g2199 . . . . . . . Cone4ag1683 Cone7ag1600 . . Lsi04g02237 . . . . . . . . Bpe04g00118 . . . . . . Cma12g00654 . . . . . . . . . . . Cla08g01002 . . Cco08g1152 Clacu08g1153 . Cre08g0938 Lsi08g00853 . Chy03g00671 .
Vvi4g123 . . . . . . . . Cmo05g00435 . . Cma05g00418 . Car12g00603 Sed11g0865 Cpe07g00570 . Bhi04g01492 Tan02g1607 Cmetu03g0494 . Hepe08g1410 . Lcy13g2200 . . . . . . . . . Cone17ag0938 Cone20ag0281 . . . . . . . Bda13g01591 Bpe14g00273 . . . . . . . Cma12g00655 . Car05g00356 . . . . . . . . . Cla08g01001 Cam08g1451 Cec08g1027 Cco08g1151 Clacu08g1152 . Cre08g0937 Lsi08g00852 . Chy03g00670 .
Vvi4g124 Blo01g01455 . . . . . . Bma01g02203 . . . . Car09g00303 . . . Cpe06g00251 . . . . . . . Cla05g01855 Cam05g1978 Cec05g1991 Cco05g2049 Clacu05g1970 Cmu05g1852 Cre05g1977 . Cone7ag1601 . . Lsi04g01403 . . . . . . . . . . . . . Cmo09g00354 Cma09g00354 . . . . Cpe02g00278 Bhi09g03108 . . . Hepe01g1904 Mch11g0437 . . . . . . . . . . . Cme07g00198
Vvi4g125 . . Bda01g00633 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma02g00538 . Cmo01g01797 . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g126 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g127 . Blo12g01022 . . . Bpe02g00501 . . . . . . Car09g00304 . . . Cpe06g00252 . . . . . . . Cla05g01856 Cam05g1981 Cec05g1994 Cco05g2052 Clacu05g1973 Cmu05g1855 Cre05g1980 . . . . . . . . . . . . Bpe14g00274 . . . . . Cmo09g00355 Cma09g00355 . . . . Cpe02g00279 . . . . . . . . . . . . . . . . . .
Vvi4g128 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g129 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g130 . . . . . . . . . . Cma01g01714 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed05g1780 . . . . . . . . Bhi09g03104 Tan01g4592 Cmetu07g0720 . Hepe01g1905 Mch11g0438 . . . . . . . . . . . Cme07g00197
Vvi4g131 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed05g1781 Cmo01g01799 . . . . . . Cpe02g00280 Bhi09g03103 Tan01g4591 Cmetu07g1652 . . Mch11g0439 . . . . . . . . . . . .
   
Previous Page 361 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
1 33321465 33324736 + Bda002657.1 Bda01g00632 632
1 33329547 33330011 - Bda002658.1 Bda01g00633 633
3 1174847 1178116 - Bda016075.1 Bda03g00135 135
13 39487876 39488375 + Bda000461.1 Bda13g01591 1591
4 36833562 36837771 + XM_039028691.1 Bhi04g01490 1490
4 36837906 36839134 - XM_039028695.1 Bhi04g01492 1492
9 79821267 79822164 + XM_039041854.1 Bhi09g03103 3103
9 79823202 79824149 + XM_039042254.1 Bhi09g03104 3104
9 79824020 79828925 - XM_039042252.1 Bhi09g03108 3108
1 53633051 53651450 - BLOR01455 Blo01g01455 1455
12 28141975 28145238 + BLOR05040 Blo12g01021 1021
12 28146148 28146618 - BLOR05041 Blo12g01022 1022
1 78938912 78943348 - Bma003048.1 Bma01g02203 2203
1 78944966 78947331 - Bma003049.1 Bma01g02204 2204
2 10570393 10570860 - Bma015043.1 Bma02g00538 538
2 3250087 3253331 + Bpe008340.1 Bpe02g00500 500
2 3258070 3258537 - Bpe025079 Bpe02g00501 501
4 807754 811033 - Bpe014839.2 Bpe04g00118 118
14 2772463 2772997 - Bpe006926.1 Bpe14g00273 273
14 2773846 2774313 - Bpe006927.1 Bpe14g00274 274
5 28650178 28655944 + CaPI482276_05g019780.1 Cam05g1978 1978
5 28658871 28659344 - CaPI482276_05g019810.1 Cam05g1981 1981
8 20804851 20805624 + CaPI482276_08g014510.1 Cam08g1451 1451
5 2068158 2069418 + Carg09303-RA Car05g00356 356
9 1686177 1691111 + Carg02782-RA Car09g00303 303
9 1691254 1692006 - Carg02783-RA Car09g00304 304
12 3991504 3992127 - Carg23944-RA Car12g00603 603
5 29575189 29580088 + CcPI632755_05g020490.1 Cco05g2049 2049
5 29583102 29583575 - CcPI632755_05g020520.1 Cco05g2052 2052
8 23337040 23337833 + CcPI632755_08g011510.1 Cco08g1151 1151
8 23338277 23341765 - CcPI632755_08g011520.1 Cco08g1152 1152
5 31947057 31952482 + CePI673135_05g019910.1 Cec05g1991 1991
5 31955484 31955957 - CePI673135_05g019940.1 Cec05g1994 1994
8 22188316 22189109 + CePI673135_08g010270.1 Cec08g1027 1027
3 9286424 9287345 + Chy3G056500.1 Chy03g00670 670
3 9287808 9291307 - Chy3G056510.1 Chy03g00671 671
5 28852867 28858632 + ClG42_05g0197000.10 Clacu05g1970 1970
5 28861587 28862060 - ClG42_05g0197300.10 Clacu05g1973 1973
8 21579077 21579850 + ClG42_08g0115200.10 Clacu08g1152 1152
8 21580295 21583804 - ClG42_08g0115300.10 Clacu08g1153 1153
5 30431830 30436733 + ClCG05G018120.2 Cla05g01855 1855
5 30437304 30441449 - ClCG05G018130.2 Cla05g01856 1856
8 22764972 22765771 + ClCG08G009970.1 Cla08g01001 1001
8 22766050 22770399 - ClCG08G009980.1 Cla08g01002 1002
1 11648309 11649229 + CmaCh01G017140.1 Cma01g01714 1714
5 1889454 1892865 + CmaCh05G004180.1 Cma05g00418 418
9 1462674 1468539 + CmaCh09G003540.1 Cma09g00354 354
9 1467748 1468218 - CmaCh09G003550.1 Cma09g00355 355
12 3464606 3467725 + CmaCh12G006540.1 Cma12g00654 654
12 3467830 3468691 - CmaCh12G006550.1 Cma12g00655 655
7 1313911 1314973 + MELO3C016897.2.1 Cme07g00197 197
7 1315215 1319864 - MELO3C016896.2.1 Cme07g00198 198
3 5915790 5917007 - PI0007128.1 Cmetu03g0494 494
3 5911431 5915711 + PI0024152.1 Cmetu03g1951 1951
7 23481728 23482904 - PI0012321.1 Cmetu07g0720 720
7 23484024 23484665 - PI0006486.1 Cmetu07g1652 1652
1 13240619 13241032 - CmoCh01G017970.1 Cmo01g01797 1797
1 13241940 13242419 - CmoCh01G017990.1 Cmo01g01799 1799
5 2035032 2036497 + CmoCh05G004350.1 Cmo05g00435 435
9 1530462 1535652 + CmoCh09G003540.1 Cmo09g00354 354
9 1535666 1536418 - CmoCh09G003550.1 Cmo09g00355 355
12 3640083 3643187 + CmoCh12G005930.1 Cmo12g00593 593
5 28579285 28584191 + CmPI595203_05g018520.1 Cmu05g1852 1852
5 28587151 28587624 - CmPI595203_05g018550.1 Cmu05g1855 1855
4 12561587 12565410 + Conep04aG0173700.1 Cone4ag1683 1683
7 10927813 10931508 + Conep07aG0164800.1 Cone7ag1600 1600
7 10931699 10935876 + Conep07aG0164900.1 Cone7ag1601 1601
17 7335319 7336872 - Conep17aG0096500.1 Cone17ag0938 938
20 1257309 1258399 - Conep20aG0029400.1 Cone20ag0281 281
2 1448288 1451630 + Cp4.1LG02g05960.1 Cpe02g00278 278
2 1452296 1452766 - Cp4.1LG02g05840.1 Cpe02g00279 279
2 1453678 1454157 - Cp4.1LG02g05850.1 Cpe02g00280 280
6 1340209 1346081 + Cp4.1LG06g02450.1 Cpe06g00251 251
6 1345380 1345793 - Cp4.1LG06g02530.1 Cpe06g00252 252
7 3773477 3776587 + Cp4.1LG07g06060.1 Cpe07g00569 569
7 3774004 3777850 - Cp4.1LG07g05980.1 Cpe07g00570 570
5 31895190 31900299 + CrPI670011_05g019770.1 Cre05g1977 1977
5 31903139 31903612 - CrPI670011_05g019800.1 Cre05g1980 1980
8 22569347 22570139 + CrPI670011_08g009370.1 Cre08g0937 937
8 22570584 22574094 - CrPI670011_08g009380.1 Cre08g0938 938
1 83874180 83879564 + Hsped.01g19040.1 Hepe01g1904 1904
1 83879930 83882119 - Hsped.01g19050.1 Hepe01g1905 1905
8 16631234 16635313 + Hsped.08g14090.1 Hepe08g1409 1409
8 16635734 16636804 - Hsped.08g14100.1 Hepe08g1410 1410
13 40905496 40909025 + Maker00025318 Lcy13g2199 2199
13 40909480 40910584 - Maker00025180 Lcy13g2200 2200
4 21789112 21794961 - Lsi04G014040.1 Lsi04g01403 1403
4 29409576 29410763 - Lsi04G022370.1 Lsi04g02237 2237
8 16950503 16951655 + Lsi08G008520.1 Lsi08g00852 852
8 16951914 16956278 - Lsi08G008530.1 Lsi08g00853 853
11 2752865 2758684 + MC11g0352 Mch11g0437 437
11 2757825 2758307 - MC11g_new0086 Mch11g0438 438
11 2759781 2760257 - MC11g0353 Mch11g0439 439
5 31446186 31447525 - Sed0005212.1 Sed05g1780 1780
5 31448472 31449313 - Sed0014752.1 Sed05g1781 1781
8 32625347 32630711 + Sed0027355.1 Sed08g1787 1787
11 20890431 20891610 + Sed0005453.1 Sed11g0865 865
1 111936477 111937222 + Tan0019154.1 Tan01g4591 4591
1 111938070 111939085 + Tan0015963.1 Tan01g4592 4592
2 74763478 74764410 + Tan0002277.1 Tan02g1607 1607
2 74764973 74768468 - Tan0016656.1 Tan02g1608 1608
4 1204312 1209560 + Vvi4g122 Vvi4g122 122
4 1209584 1211712 - Vvi4g123 Vvi4g123 123
4 1213610 1221561 + Vvi4g124 Vvi4g124 124
4 1222047 1224025 - Vvi4g125 Vvi4g125 125
4 1224640 1225293 - Vvi4g126 Vvi4g126 126
4 1225846 1228461 - Vvi4g127 Vvi4g127 127
4 1228851 1229941 - Vvi4g128 Vvi4g128 128
4 1230118 1237687 + Vvi4g129 Vvi4g129 129
4 1237844 1238388 - Vvi4g130 Vvi4g130 130
4 1239833 1246496 - Vvi4g131 Vvi4g131 131
       

DecoBrowse