Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1232 Blo04g00972 . . . Bpe15g00393 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda14g01062 . . Bma03g01038 . Sed01g0039 . . . . . . . . Bhi10g02342 Tan07g0892 Cmetu11g0604 . Hepe08g1262 . . Cla02g00075 Cam02g0076 Cec02g0078 Cco02g0070 Clacu02g0074 Cmu02g0073 Cre02g0413 Lsi10g00705 . . Cme11g00079
Vvi4g1233 Blo04g00971 . . . Bpe15g00394 Bpe13g00011 . . . . Cma03g01074 Cma07g00782 . . Sed10g0484 . Cpe10g00353 Bhi03g01389 Tan03g1340 Cmetu08g0734 . . . . . . . . . . . . . . . . . . Cme08g01051 . . . Bda14g01061 . . Bma03g01037 Bma06g00529 . . . . . . . . . . . . . . . . . . . . . . . . Csa06g02808 Chy02g01026 .
Vvi4g1234 Blo04g00970 . . . Bpe15g00395 . . . Cmo02g00617 Cmo20g01084 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma03g01036 . Sed01g3751 . . . Cma20g01075 . . Cpe05g01074 . Bhi10g02341 Tan07g0890 Cmetu09g0584 . Hepe08g1260 . . Cla02g00074 Cam02g0075 Cec02g0077 Cco02g0069 Clacu02g0073 Cmu02g0072 Cre02g0412 Lsi10g00706 . . Cme11g00078
Vvi4g1235 . . . . Bpe15g00396 Bpe13g00012 . . . Cmo20g01081 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda14g01060 . . Bma03g01035 Bma06g00528 Sed05g3844 . . . Cma20g01074 . . . . Bhi10g02340 Tan07g0888 Cmetu11g1866 . Hepe08g1259 . . Cla02g00073 Cam02g0074 Cec02g0075 Cco02g0068 Clacu02g0072 Cmu02g0071 Cre02g0411 Lsi10g00708 . . .
Vvi4g1236 . Blo16g00518 . . . Bpe13g00013 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01354 . . . . Bma06g00527 . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g1237 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo05g00558 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g1238 . . . . . . . . Cmo02g00618 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cpe05g01073 . . . . . . . . . . . . . . . . . . .
Vvi4g1239 . . Bda04g00338 Bda10g00351 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe10g00242 Bpe06g00279 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g1240 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g1241 . . . . . . . . Cmo02g00620 Cmo20g01080 Cma03g01077 Cma07g00783 Car03g00968 Car07g00770 Sed01g0035 Cpe19g00544 Cpe10g00351 Bhi03g01386 Tan03g1337 Cmetu11g0408 . Hepe04g1131 . . Cla01g01535 Cam01g1604 Cec04g1251 Cco04g1322 Clacu01g1630 Cmu01g1517 Cre04g1195 . . . . Lsi01g01130 . . Cme08g01062 . Blo06g00212 . . . Bpe06g00278 . . . . Cmo07g00807 . Cma20g01073 . . . Cpe16g00072 Bhi10g02339 Tan07g0883 . . Hepe08g1258 . . Cla02g00072 Cam02g0073 Cec02g0074 Cco02g0067 Clacu02g0071 Cmu02g0070 Cre02g0410 Lsi10g00709 Csa06g02804 Chy02g01031 Cme11g00076
   
Previous Page 472 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
4 48420359 48420862 + Bda019236.1 Bda04g00338 338
10 34217986 34218396 - Bda007153.1 Bda10g00351 351
11 15443661 15445706 + Bda007886.1 Bda11g01354 1354
14 9124305 9125745 - Bda027875.1 Bda14g01060 1060
14 9132286 9132858 + Bda027876.1 Bda14g01061 1061
14 9133573 9134396 - Bda027877.1 Bda14g01062 1062
3 28900854 28903883 + XM_039025747.1 Bhi03g01386 1386
3 29062313 29063182 + XM_039027283.1 Bhi03g01389 1389
10 61009448 61012602 + XM_039046071.1 Bhi10g02339 2339
10 61016196 61020487 - XM_039046072.1 Bhi10g02340 2340
10 61055848 61058350 + XM_039045786.1 Bhi10g02341 2341
10 61065183 61071201 - XM_039047019.1 Bhi10g02342 2342
4 12136378 12138176 + BLOR13882 Blo04g00970 970
4 12140014 12140589 + BLOR13883 Blo04g00971 971
4 12151140 12152177 - BLOR13884 Blo04g00972 972
5 12256851 12258110 + BLOR15520 Blo05g00558 558
6 9470857 9472266 - BLOR16795 Blo06g00212 212
16 21072032 21083834 + BLOR07766 Blo16g00518 518
3 12109626 12111052 - Bma017393.1 Bma03g01035 1035
3 12114161 12115943 + Bma017394.1 Bma03g01036 1036
3 12118213 12118791 + Bma017395.1 Bma03g01037 1037
3 12119351 12120154 - Bma017396.1 Bma03g01038 1038
6 27184784 27186931 - Bma023403.1 Bma06g00527 527
6 27214219 27216163 - Bma023404.2 Bma06g00528 528
6 27228130 27228711 + Bma023408.1 Bma06g00529 529
6 13735910 13737310 + Bpe019773.1 Bpe06g00278 278
6 13738948 13739565 + Bpe019774.1 Bpe06g00279 279
10 9025141 9025566 + Bpe002576.1 Bpe10g00242 242
13 277878 278444 - Bpe006094.1 Bpe13g00011 11
13 280182 282108 + Bpe024915 Bpe13g00012 12
13 282942 284030 + Bpe006095.1 Bpe13g00013 13
15 15454028 15456263 + Bpe001330.1 Bpe15g00393 393
15 15456847 15457425 - Bpe001331.1 Bpe15g00394 394
15 15458834 15460610 - Bpe001332.1 Bpe15g00395 395
15 15467398 15467601 + Bpe001333.1 Bpe15g00396 396
1 29604761 29606319 + CaPI482276_01g016040.1 Cam01g1604 1604
2 1837829 1839219 + CaPI482276_02g000730.1 Cam02g0073 73
2 1843150 1846226 - CaPI482276_02g000740.1 Cam02g0074 74
2 1854573 1856329 + CaPI482276_02g000750.1 Cam02g0075 75
2 1861059 1865682 - CaPI482276_02g000760.1 Cam02g0076 76
3 7490909 7494647 - Carg10553-RA Car03g00968 968
7 4019537 4021396 - Carg05292-RA Car07g00770 770
2 714053 715443 + CcPI632755_02g000670.1 Cco02g0067 67
2 719449 719762 - CcPI632755_02g000680.1 Cco02g0068 68
2 731057 732813 + CcPI632755_02g000690.1 Cco02g0069 69
2 737306 741970 - CcPI632755_02g000700.1 Cco02g0070 70
4 28544378 28547843 + CcPI632755_04g013220.1 Cco04g1322 1322
2 706262 707652 + CePI673135_02g000740.1 Cec02g0074 74
2 711595 714701 - CePI673135_02g000750.1 Cec02g0075 75
2 725182 726782 + CePI673135_02g000770.1 Cec02g0077 77
2 731981 736309 - CePI673135_02g000780.1 Cec02g0078 78
4 32097499 32098077 + CePI673135_04g012510.1 Cec04g1251 1251
2 6998733 6999546 - Chy2G032930.1 Chy02g01026 1026
2 7030507 7032078 - Chy2G032980.1 Chy02g01031 1031
1 28398144 28401355 + ClG42_01g0163000.10 Clacu01g1630 1630
2 723767 725209 + ClG42_02g0007100.10 Clacu02g0071 71
2 729111 729424 - ClG42_02g0007200.10 Clacu02g0072 72
2 740619 742354 + ClG42_02g0007300.10 Clacu02g0073 73
2 747181 751389 - ClG42_02g0007400.10 Clacu02g0074 74
1 29929329 29950613 + ClCG01G015660.2 Cla01g01535 1535
2 718261 720944 + ClCG02G000680.1 Cla02g00072 72
2 725892 729505 - ClCG02G000690.1 Cla02g00073 73
2 739567 741793 + ClCG02G000700.1 Cla02g00074 74
2 748077 752791 - ClCG02G000710.1 Cla02g00075 75
3 7380445 7381014 - CmaCh03G010740.1 Cma03g01074 1074
3 7386277 7388825 - CmaCh03G010770.1 Cma03g01077 1077
7 3537833 3539583 - CmaCh07G007820.1 Cma07g00782 782
7 3541172 3542704 - CmaCh07G007830.1 Cma07g00783 783
20 8126203 8129695 + CmaCh20G010730.1 Cma20g01073 1073
20 8131254 8133788 - CmaCh20G010740.1 Cma20g01074 1074
20 8150436 8153081 + CmaCh20G010750.1 Cma20g01075 1075
8 6864442 6865139 - MELO3C008029.2.1 Cme08g01051 1051
8 6930941 6933730 - MELO3C008032.2.1 Cme08g01062 1062
11 613737 616949 + MELO3C023264.2.1 Cme11g00076 76
11 629359 631382 + MELO3C023266.2.1 Cme11g00078 78
11 635682 639735 - MELO3C023267.2.1 Cme11g00079 79
8 18611830 18612399 + PI0024902.1 Cmetu08g0734 734
9 817961 818353 + PI0020637.1 Cmetu09g0584 584
11 30383063 30386516 - PI0016042.1 Cmetu11g0408 408
11 30359766 30363995 + PI0009792.1 Cmetu11g0604 604
11 30376876 30379808 + PI0000129.1 Cmetu11g1866 1866
2 3835565 3837265 - CmoCh02G006170.1 Cmo02g00617 617
2 3846091 3848691 + CmoCh02G006180.1 Cmo02g00618 618
2 3851300 3854471 - CmoCh02G006200.1 Cmo02g00620 620
7 3719562 3722299 - CmoCh07G008070.1 Cmo07g00807 807
20 10245769 10249274 + CmoCh20G010800.1 Cmo20g01080 1080
20 10250820 10253215 - CmoCh20G010810.1 Cmo20g01081 1081
20 10264768 10267385 + CmoCh20G010840.1 Cmo20g01084 1084
1 28746456 28749718 + CmPI595203_01g015170.1 Cmu01g1517 1517
2 722978 724420 + CmPI595203_02g000700.1 Cmu02g0070 70
2 728324 728566 - CmPI595203_02g000710.1 Cmu02g0071 71
2 739814 741546 + CmPI595203_02g000720.1 Cmu02g0072 72
2 746374 750579 - CmPI595203_02g000730.1 Cmu02g0073 73
5 7098807 7102291 - Cp4.1LG05g10800.1 Cpe05g01073 1073
5 7110059 7112390 + Cp4.1LG05g10690.1 Cpe05g01074 1074
10 2078847 2081893 + Cp4.1LG10g03300.1 Cpe10g00351 351
10 2086894 2087463 + Cp4.1LG10g03280.1 Cpe10g00353 353
16 1494604 1498141 + Cp4.1LG16g00720.1 Cpe16g00072 72
19 4606352 4609916 + Cp4.1LG19g12210.1 Cpe19g00544 544
2 1265488 1266930 + CrPI670011_02g004100.1 Cre02g0410 410
2 1271326 1274361 - CrPI670011_02g004110.1 Cre02g0411 411
2 1282423 1284148 + CrPI670011_02g004120.1 Cre02g0412 412
2 1288965 1293314 - CrPI670011_02g004130.1 Cre02g0413 413
4 30604513 30607912 + CrPI670011_04g011950.1 Cre04g1195 1195
6 24455342 24458623 + CsaV3_6G041900.1 Csa06g02804 2804
6 24482818 24490287 + CsaV3_6G041940.1 Csa06g02808 2808
4 66368545 66371711 + Hsped.04g11310.1 Hepe04g1131 1131
8 13509601 13512729 + Hsped.08g12580.1 Hepe08g1258 1258
8 13520713 13523889 - Hsped.08g12590.1 Hepe08g1259 1259
8 13552772 13554457 + Hsped.08g12600.1 Hepe08g1260 1260
8 13568889 13575186 - Hsped.08g12620.1 Hepe08g1262 1262
1 9427824 9430512 - Lsi01G011300.1 Lsi01g01130 1130
10 9865443 9869957 + Lsi10G007050.1 Lsi10g00705 705
10 9874458 9876465 - Lsi10G007060.1 Lsi10g00706 706
10 9886922 9890044 + Lsi10G007080.1 Lsi10g00708 708
10 9906107 9909975 - Lsi10G007090.1 Lsi10g00709 709
1 419442 422754 + Sed0001824.1 Sed01g0035 35
1 433363 436031 + Sed0024742.1 Sed01g0039 39
1 66615867 66619229 + Sed0022401.2 Sed01g3751 3751
5 46079125 46080765 + Sed0020530.1 Sed05g3844 3844
10 3082022 3082847 - Sed0021560.1 Sed10g0484 484
3 69919421 69922480 + Tan0011439.2 Tan03g1337 1337
3 69968698 69969267 + Tan0013012.1 Tan03g1340 1340
7 15847794 15850610 + Tan0018604.2 Tan07g0883 883
7 15981647 15984968 - Tan0003356.1 Tan07g0888 888
7 16316341 16318813 - Tan0014943.1 Tan07g0890 890
7 16386841 16398723 + Tan0018431.2 Tan07g0892 892
4 21277030 21300415 + Vvi4g1232 Vvi4g1232 1232
4 21301123 21302040 - Vvi4g1233 Vvi4g1233 1233
4 21315505 21327686 - Vvi4g1234 Vvi4g1234 1234
4 21358595 21362779 + Vvi4g1235 Vvi4g1235 1235
4 21371012 21372847 + Vvi4g1236 Vvi4g1236 1236
4 21377335 21378232 - Vvi4g1237 Vvi4g1237 1237
4 21388375 21395590 + Vvi4g1238 Vvi4g1238 1238
4 21396247 21402234 - Vvi4g1239 Vvi4g1239 1239
4 21416364 21416613 - Vvi4g1240 Vvi4g1240 1240
4 21427666 21430968 - Vvi4g1241 Vvi4g1241 1241
       

DecoBrowse