Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g234 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1069 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g235 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g236 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g237 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g238 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g239 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g240 . . . . . . Bma10g00502 . Cmo16g00845 Cmo04g00973 . . . . . . . . . . . . . . Cla10g00647 Cam10g0643 Cec10g0664 Cco10g0639 Clacu10g0666 Cmu10g1493 Cre10g0874 . . Cone14ag1070 Cone15ag1059 . Csa03g00627 . . . . . Bda12g00865 . Bpe03g00834 . . . . . Cma04g00906 Cma16g00782 Car04g00849 . Cpe14g00681 . . . . . . . . . . . . . . . Lsi05g00715 . Chy06g01700 .
Vvi19g241 . . Bda07g00293 . . Bpe02g01905 Bma10g00503 . . . . Cma09g00872 Car01g01030 Car09g00785 Sed06g0407 Cpe06g00695 Cpe02g00705 Bhi09g03405 Tan01g4405 Cmetu07g2305 . Hepe01g1379 Mch11g1077 . Cla11g01769 . . Cco11g1863 . . Cre11g2213 Cone3ag1414 Cone10ag1343 . Cone12ag1456 Lsi04g01328 Csa04g02351 Chy07g00084 . . . . . Bpe11g00486 Bpe03g00833 . Bma14g00232 . Cmo01g01258 Cmo09g00861 . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g242 . . . . . . . . . Cmo04g00974 . . . . . . . . . . . . . . Cla10g00645 Cam10g0641 Cec10g0663 Cco10g0638 Clacu10g0664 Cmu10g1491 Cre10g0873 . . . Cone15ag1061 . Csa03g00625 . . . . . . . . . . . . . Cma04g00907 . Car04g00850 . . . . . . . . . . . . . . . . . Lsi05g00714 . Chy06g01701 .
Vvi19g243 Blo03g00650 . Bda07g00292 . . . . . . Cmo04g00975 . . . . . . . . . . . . . . Cla10g00644 Cam10g0640 Cec10g0662 Cco10g0637 Clacu10g0663 Cmu10g1490 Cre10g0872 . . . Cone15ag1062 . Csa03g00624 . . . . . . . Bpe01g00425 . Bma14g00231 . . . Cma04g00908 . Car04g00851 . . . . . . . . . . . . . . . . . Lsi05g00713 . Chy06g01702 .
   
Previous Page 2269 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
7 4037791 4040894 - Bda025374.1 Bda07g00292 292
7 4041845 4042621 - Bda025375.1 Bda07g00293 293
12 39087609 39089257 - Bda009391.1 Bda12g00865 865
9 86503838 86506503 - XM_039043765.1 Bhi09g03405 3405
3 27615689 27618495 - BLOR11831 Blo03g00650 650
10 5906875 5908950 + Bma004192.1 Bma10g00502 502
10 5910501 5911265 + Bma004193.1 Bma10g00503 503
14 2796596 2799700 - Bma010642.1 Bma14g00231 231
14 2800891 2801667 - Bma010643.1 Bma14g00232 232
1 2600323 2601986 - Bpe000410.1 Bpe01g00425 425
2 21035635 21036339 + Bpe009731.1 Bpe02g01905 1905
3 28236668 28237432 - Bpe012743.1 Bpe03g00833 833
3 28238862 28240910 - Bpe012744.1 Bpe03g00834 834
11 3752536 3753312 + Bpe003856.1 Bpe11g00486 486
10 9997175 9999131 - CaPI482276_10g006400.1 Cam10g0640 640
10 10019613 10022906 - CaPI482276_10g006410.1 Cam10g0641 641
10 10049117 10051586 - CaPI482276_10g006430.1 Cam10g0643 643
1 9780746 9781528 - Carg14694-RA Car01g01030 1030
4 4932253 4934683 + Carg00024-RA Car04g00849 849
4 4936749 4937896 + Carg00025-RA Car04g00850 850
4 4938606 4940885 + Carg00026-RA Car04g00851 851
9 4625193 4625969 + Carg17107-RA Car09g00785 785
10 8779584 8782628 - CcPI632755_10g006370.1 Cco10g0637 637
10 8819650 8822750 - CcPI632755_10g006380.1 Cco10g0638 638
10 8841815 8844764 - CcPI632755_10g006390.1 Cco10g0639 639
11 31316094 31318666 + CcPI632755_11g018630.1 Cco11g1863 1863
10 9230191 9232152 - CePI673135_10g006620.1 Cec10g0662 662
10 9253246 9256547 - CePI673135_10g006630.1 Cec10g0663 663
10 9281889 9284530 - CePI673135_10g006640.1 Cec10g0664 664
6 19665880 19668020 + Chy6G122280.1 Chy06g01700 1700
6 19672998 19678896 + Chy6G122290.1 Chy06g01701 1701
6 19683589 19685512 + Chy6G122300.1 Chy06g01702 1702
7 756329 767622 + Chy7G129140.1 Chy07g00084 84
10 9280886 9282806 - ClG42_10g0066300.10 Clacu10g0663 663
10 9307417 9310660 - ClG42_10g0066400.10 Clacu10g0664 664
10 9336463 9339402 - ClG42_10g0066600.10 Clacu10g0666 666
10 9788820 9806129 - ClCG10G006860.2 Cla10g00644 644
10 9839331 9842933 - ClCG10G006890.2 Cla10g00645 645
10 9868671 9871869 - ClCG10G006910.2 Cla10g00647 647
11 31299272 31303277 + ClCG11G018130.2 Cla11g01769 1769
4 4711490 4714195 + CmaCh04G009060.1 Cma04g00906 906
4 4716319 4720443 + CmaCh04G009070.1 Cma04g00907 907
4 4720988 4726019 + CmaCh04G009080.1 Cma04g00908 908
9 4278520 4291354 + CmaCh09G008720.1 Cma09g00872 872
16 4299753 4303056 + CmaCh16G007820.1 Cma16g00782 782
7 22086103 22088789 + PI0006542.1 Cmetu07g2305 2305
1 10092869 10093651 - CmoCh01G012580.1 Cmo01g01258 1258
4 4945334 4947961 + CmoCh04G009730.1 Cmo04g00973 973
4 4949678 4953724 + CmoCh04G009740.1 Cmo04g00974 974
4 4954875 4957588 + CmoCh04G009750.1 Cmo04g00975 975
9 4446419 4447213 + CmoCh09G008610.1 Cmo09g00861 861
16 4457627 4461197 + CmoCh16G008450.1 Cmo16g00845 845
10 9897165 9899085 - CmPI595203_10g014900.1 Cmu10g1490 1490
10 9923702 9926949 - CmPI595203_10g014910.1 Cmu10g1491 1491
10 9952741 9955681 - CmPI595203_10g014930.1 Cmu10g1493 1493
3 32967377 32969780 - Conep03aG0193000.1 Cone3ag1414 1414
10 10476717 10478789 - Conep10aG0138500.1 Cone10ag1343 1343
12 10470220 10470903 - Conep12aG0150800.1 Cone12ag1456 1456
14 8993532 8994110 - Conep14aG0109000.1 Cone14ag1069 1069
14 8994984 8997157 + Conep14aG0109100.1 Cone14ag1070 1070
15 8773164 8775049 + Conep15aG0108100.1 Cone15ag1059 1059
15 8779097 8780403 + Conep15aG0108300.1 Cone15ag1061 1061
15 8785477 8787983 + Conep15aG0108500.1 Cone15ag1062 1062
2 4450697 4453072 + Cp4.1LG02g01660.1 Cpe02g00705 705
6 4327532 4328302 + Cp4.1LG06g06950.1 Cpe06g00695 695
14 4473832 4476894 + Cp4.1LG14g00290.1 Cpe14g00681 681
10 9889605 9891561 - CrPI670011_10g008720.1 Cre10g0872 872
10 9921863 9925137 - CrPI670011_10g008730.1 Cre10g0873 873
10 9952574 9955496 - CrPI670011_10g008740.1 Cre10g0874 874
11 33853476 33856049 + CrPI670011_11g022130.1 Cre11g2213 2213
3 5424877 5428451 - CsaV3_3G006240.1 Csa03g00624 624
3 5430736 5433519 - CsaV3_3G006250.1 Csa03g00625 625
3 5439851 5443019 - CsaV3_3G006270.1 Csa03g00627 627
4 23932655 23935939 + CsaV3_4G033770.1 Csa04g02351 2351
1 79015205 79017259 - Hsped.01g13790.1 Hepe01g1379 1379
4 21066138 21068746 - Lsi04G013280.1 Lsi04g01328 1328
5 9673769 9675755 - Lsi05G007130.1 Lsi05g00713 713
5 9683404 9686943 - Lsi05G007140.1 Lsi05g00714 714
5 9693130 9695273 - Lsi05G007150.1 Lsi05g00715 715
11 7502908 7503959 + MC11g0883 Mch11g1077 1077
6 3591864 3598992 + Sed0023591.1 Sed06g0407 407
1 109222776 109225415 + Tan0009608.1 Tan01g4405 4405
19 2950155 2950869 - Vvi19g234 Vvi19g234 234
19 2951994 2952975 - Vvi19g235 Vvi19g235 235
19 2952975 2954565 - Vvi19g236 Vvi19g236 236
19 2974603 2975506 - Vvi19g237 Vvi19g237 237
19 2975505 2977210 - Vvi19g238 Vvi19g238 238
19 2979936 2982633 - Vvi19g239 Vvi19g239 239
19 2987858 3003837 + Vvi19g240 Vvi19g240 240
19 3010025 3013653 + Vvi19g241 Vvi19g241 241
19 3020094 3021255 + Vvi19g242 Vvi19g242 242
19 3022708 3035710 + Vvi19g243 Vvi19g243 243
       

DecoBrowse