Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g819 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi5g820 . . . . . . . . . . Cma06g01277 . Car06g01098 Car14g01667 . . Cpe03g01559 . . . . . . . . . . . . . . . . . . Lsi05g01793 . . Cme06g00430 . . . . . . . . . . Cmo14g01906 . . . . . . . . . . . . . Cla05g00390 Cam05g0423 Cec05g0428 Cco05g0429 Clacu05g0419 Cmu05g0401 Cre05g0464 . Csa03g01145 Chy06g00409 .
Vvi5g821 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi5g822 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi5g823 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi5g824 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi5g825 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi5g826 . . . . . . . . . . . Cma14g01862 . . . Cpe08g00370 Cpe03g01560 Bhi01g00028 . . . . . . . . . . . . . . . . . Lsi05g01794 . . Cme06g00428 . . . . . . . . . Cmo06g01285 . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi5g827 . . . Bda08g00017 . . . Bma05g01267 . . Cma06g01276 Cma14g01864 Car06g01097 Car14g01668 . Cpe08g00371 Cpe03g01561 . . . . . . . . . . . . . . . Cone15ag0214 . . Lsi05g01795 . . Cme06g00425 . . . . . . . . . . Cmo14g01908 . . . . . . . . . . . . . Cla05g00385 Cam05g0419 Cec05g0424 Cco05g0424 Clacu05g0415 Cmu05g0397 Cre05g0459 . Csa03g01144 Chy06g00408 .
Vvi5g828 Blo01g00313 Blo12g00132 Bda03g01108 . Bpe04g01053 . Bma04g01034 Bma05g01268 . . . . . . . . . . . . . . . . Cla06g00710 Cam06g0764 Cec06g0768 Cco06g0779 Clacu06g0752 Cmu06g0735 Cre06g1515 Cone14ag0201 Cone15ag0219 . Cone4ag0377 . . . . . . . . Bpe05g01123 . . . . . . . . . . . Cpe17g00226 Bhi12g01535 . . Lac12g2109 . . . . . . . . . . . . . Cme05g00632
   
Previous Page 567 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
3 11273466 11277160 + Bda017156.1 Bda03g01108 1108
8 153105 160189 + Bda024407.1 Bda08g00017 17
1 297668 298897 + XM_039021875.1 Bhi01g00028 28
12 49988835 49993377 - XM_039020407.1 Bhi12g01535 1535
1 3802429 3808044 + BLOR00313 Blo01g00313 313
12 9247900 9251637 - BLOR04151 Blo12g00132 132
4 18248070 18251833 + Bma019654.1 Bma04g01034 1034
5 52028891 52030091 + Bma022459.1 Bma05g01267 1267
5 52031124 52034740 + Bma031241 Bma05g01268 1268
4 7735958 7740105 + Bpe015722.1 Bpe04g01053 1053
5 23560919 23564516 + Bpe018541.1 Bpe05g01123 1123
5 3835370 3838754 - CaPI482276_05g004190.1 Cam05g0419 419
5 3850189 3850506 + CaPI482276_05g004230.1 Cam05g0423 423
6 10233953 10238459 - CaPI482276_06g007640.1 Cam06g0764 764
6 8237524 8240571 - Carg06262-RA Car06g01097 1097
6 8241567 8242443 - Carg06261-RA Car06g01098 1098
14 13280571 13284235 - Carg16520-RA Car14g01667 1667
14 13286268 13290277 + Carg16519-RA Car14g01668 1668
5 3490138 3492945 - CcPI632755_05g004240.1 Cco05g0424 424
5 3505581 3506331 + CcPI632755_05g004290.1 Cco05g0429 429
6 8936746 8941287 - CcPI632755_06g007790.1 Cco06g0779 779
5 3485829 3489137 - CePI673135_05g004240.1 Cec05g0424 424
5 3500380 3500709 + CePI673135_05g004280.1 Cec05g0428 428
6 8980123 8984507 - CePI673135_06g007680.1 Cec06g0768 768
6 2757279 2760264 - Chy6G109360.1 Chy06g00408 408
6 2761728 2762605 - Chy6G109370.1 Chy06g00409 409
5 3548568 3551875 - ClG42_05g0041500.10 Clacu05g0415 415
5 3562864 3563181 + ClG42_05g0041900.10 Clacu05g0419 419
6 8796848 8801345 - ClG42_06g0075200.10 Clacu06g0752 752
5 3509403 3513132 - ClCG05G003720.1 Cla05g00385 385
5 3521607 3526286 + ClCG05G003780.1 Cla05g00390 390
6 9023258 9028050 - ClCG06G007380.1 Cla06g00710 710
6 8495518 8498816 - CmaCh06G012760.1 Cma06g01276 1276
6 8499592 8500393 - CmaCh06G012770.1 Cma06g01277 1277
14 13214607 13217686 - CmaCh14G018620.1 Cma14g01862 1862
14 13219588 13223469 + CmaCh14G018640.1 Cma14g01864 1864
5 6645406 6650005 - MELO3C023058.2.1 Cme05g00632 632
6 2712589 2716107 - MELO3C006351.2.1 Cme06g00425 425
6 2719538 2720993 + MELO3C006353.2.1 Cme06g00428 428
6 2724580 2725507 + MELO3C006354.2.1 Cme06g00430 430
6 9685452 9692461 - CmoCh06G012850.1 Cmo06g01285 1285
14 14201254 14202178 - CmoCh14G019060.1 Cmo14g01906 1906
14 14206638 14209727 + CmoCh14G019080.1 Cmo14g01908 1908
5 3385762 3389069 - CmPI595203_05g003970.1 Cmu05g0397 397
5 3400041 3400358 + CmPI595203_05g004010.1 Cmu05g0401 401
6 8615173 8619671 - CmPI595203_06g007350.1 Cmu06g0735 735
4 1718905 1723160 + Conep04aG0039000.1 Cone4ag0377 377
14 917172 920494 + Conep14aG0020500.1 Cone14ag0201 201
15 1011842 1014862 + Conep15aG0021800.1 Cone15ag0214 214
15 1036298 1039815 + Conep15aG0022300.1 Cone15ag0219 219
3 12095366 12096429 - Cp4.1LG03g18240.1 Cpe03g01559 1559
3 12097087 12098642 - Cp4.1LG03g18220.1 Cpe03g01560 1560
3 12103921 12107805 + Cp4.1LG03g18360.1 Cpe03g01561 1561
8 2308785 2309938 + Cp4.1LG08g03030.1 Cpe08g00370 370
8 2310601 2315747 + Cp4.1LG08g03070.1 Cpe08g00371 371
17 1450142 1454698 - Cp4.1LG17g02230.1 Cpe17g00226 226
5 4171552 4174546 - CrPI670011_05g004590.1 Cre05g0459 459
5 4188674 4189392 + CrPI670011_05g004640.1 Cre05g0464 464
6 9782994 9787543 - CrPI670011_06g015150.1 Cre06g1515 1515
3 8974751 8979465 - CsaV3_3G011440.1 Csa03g01144 1144
3 8980126 8981653 - CsaV3_3G011450.1 Csa03g01145 1145
12 38236132 38240541 - Lag0016481.1 Lac12g2109 2109
5 25255588 25256576 + Lsi05G017930.1 Lsi05g01793 1793
5 25257655 25258569 + Lsi05G017940.1 Lsi05g01794 1794
5 25260778 25264036 + Lsi05G017950.1 Lsi05g01795 1795
5 10628175 10632064 - Vvi5g819 Vvi5g819 819
5 10653000 10654241 - Vvi5g820 Vvi5g820 820
5 10681153 10689366 - Vvi5g821 Vvi5g821 821
5 10720369 10724976 - Vvi5g822 Vvi5g822 822
5 10733324 10734683 - Vvi5g823 Vvi5g823 823
5 10769894 10770678 - Vvi5g824 Vvi5g824 824
5 10803638 10807112 - Vvi5g825 Vvi5g825 825
5 10852779 10861431 - Vvi5g826 Vvi5g826 826
5 10874083 10886526 + Vvi5g827 Vvi5g827 827
5 10894991 10900932 + Vvi5g828 Vvi5g828 828
       

DecoBrowse