Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g216 . Blo15g00394 Bda06g00468 . Bpe07g00704 . . Bma12g00910 . Cmo11g01757 . . . . Sed01g2461 . . Bhi05g01669 Tan02g0642 Cmetu01g0333 . . . . Cla02g00401 Cam02g0406 Cec02g0406 Cco02g0422 Clacu02g0409 Cmu02g0405 Cre02g0740 Cone12ag1250 . Cone3ag0976 Cone10ag1228 Lsi10g00810 . . Cme01g01219 . . . . Bpe15g00798 . . . . . . Cma11g01360 . . . Cpe16g00335 . . . . . . . . . . . . . . . . . Chy01g00654 .
Vvi3g217 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g218 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g219 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g220 . . . . . . . . . . . Cma20g00732 . Car20g00632 . Cpe04g00610 . Bhi05g01668 . . . Hepe02g0399 . . . . . . . . . . Cone8ag1305 . . Lsi10g00812 Csa07g00130 . . Blo04g00586 . . Bda14g00631 . . Bma03g00619 . . . Cmo20g00729 . . Car11g01388 . . . . . . . . . . Cla02g01085 Cam02g1162 Cec02g1160 Cco02g1208 Clacu02g1153 Cmu02g1115 Cre02g1419 Lsi11g01224 . . .
Vvi3g221 . . Bda06g00467 . Bpe07g00703 Bpe12g00134 . Bma12g00909 Cmo19g00771 Cmo11g01758 . . . . . Cpe04g00611 Cpe15g00613 Bhi05g01666 . . . . . . Cla02g00400 Cam02g0405 Cec02g0405 Cco02g0421 Clacu02g0408 Cmu02g0404 Cre02g0739 Cone8ag0877 Cone12ag0844 . . . Csa07g00131 . Cme01g01218 Blo04g00587 Blo13g00492 Bda15g01020 Bda14g00632 . . Bma03g00620 Bma08g00742 . . . Cma11g01359 Cma19g00758 Car11g01389 Car19g00592 . . . . . . . . . . . . . . . . Lsi11g01225 . Chy01g00653 .
Vvi3g222 . . . . . . . . . . . . . . . . . Bhi05g01664 Tan02g0638 . . Hepe02g0397 . . Cla02g00399 Cam02g0404 Cec02g0404 Cco02g0419 Clacu02g0407 Cmu02g0403 Cre02g0737 Cone12ag1252 Cone8ag1307 . . . Csa07g00134 . Cme01g01214 . . Bda15g01019 . Bpe15g00796 . . Bma08g00739 . . . Cma11g01358 . Car11g01391 . . . . . . . . . . . . . . . . . Lsi11g01228 . Chy01g00652 .
Vvi3g223 . . . . . . . . . Cmo11g01759 . . . . Sed04g3823 Cpe04g00612 . Bhi05g01663 Tan02g0637 Cmetu01g0006 . . . . . . . . . . . . . . . . . . . Blo04g00588 . . Bda14g00633 . . Bma03g00621 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g224 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g225 . . . . . . . . Cmo19g00774 . . . . . . . Cpe15g00616 Bhi05g01657 Tan02g0633 . . . . . . . . . . . . . . . . . Csa07g00139 . Cme01g01209 . . Bda15g01018 . . . . Bma08g00738 . . . Cma11g01356 Cma19g00762 . . . . . . . . . . . . . . . . . . Lsi11g01239 . Chy01g00647 .
   
Previous Page 260 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
6 6719315 6723968 + Bda023713.1 Bda06g00467 467
6 6725575 6728940 + Bda023714.1 Bda06g00468 468
14 4734301 4737044 - Bda027387.1 Bda14g00631 631
14 4747419 4752752 - Bda027389.2 Bda14g00632 632
14 4757219 4760288 - Bda027390.1 Bda14g00633 633
15 19051991 19053626 + Bda012997.2 Bda15g01018 1018
15 19067904 19070961 + Bda012999.1 Bda15g01019 1019
15 19128759 19134396 + Bda013001.2 Bda15g01020 1020
5 54613638 54615124 + XM_039032881.1 Bhi05g01657 1657
5 54678782 54682469 + XM_039032188.1 Bhi05g01663 1663
5 54679390 54682469 + XM_039032189.1 Bhi05g01664 1664
5 54723556 54734850 + XM_039032603.1 Bhi05g01666 1666
5 54737602 54742716 + XM_039031650.1 Bhi05g01668 1668
5 54737602 54741718 + XM_039031651.1 Bhi05g01669 1669
4 5052791 5054620 - BLOR13498 Blo04g00586 586
4 5061539 5067032 - BLOR13499 Blo04g00587 587
4 5075607 5078749 - BLOR13500 Blo04g00588 588
13 26099919 26105628 + BLOR05773 Blo13g00492 492
15 5505605 5517651 - BLOR06788 Blo15g00394 394
3 5110518 5113485 - Bma016910.1 Bma03g00619 619
3 5114687 5120156 - Bma016911.2 Bma03g00620 620
3 5124999 5128056 - Bma016912.1 Bma03g00621 621
8 43398792 43400456 + Bma028107.1 Bma08g00738 738
8 43462595 43465654 + Bma028108.1 Bma08g00739 739
8 43584343 43590221 + Bma028113.2 Bma08g00742 742
12 40538335 40542942 + Bma008240.2 Bma12g00909 909
12 40544786 40548160 + Bma008241.1 Bma12g00910 910
7 13640144 13644705 + Bpe021549.2 Bpe07g00703 703
7 13646352 13649712 + Bpe021550.1 Bpe07g00704 704
12 978390 983866 - Bpe005374.1 Bpe12g00134 134
15 18184790 18186570 + Bpe001723.1 Bpe15g00796 796
15 18202656 18205623 + Bpe001724.1 Bpe15g00798 798
2 4755747 4759250 + CaPI482276_02g004040.1 Cam02g0404 404
2 4785782 4795623 + CaPI482276_02g004050.1 Cam02g0405 405
2 4798383 4802317 + CaPI482276_02g004060.1 Cam02g0406 406
2 22735526 22739429 + CaPI482276_02g011620.1 Cam02g1162 1162
11 11354302 11358742 - Carg26373-RA Car11g01388 1388
11 11360686 11367137 - Carg26372-RA Car11g01389 1389
11 11381608 11383843 - Carg26370-RA Car11g01391 1391
19 7307944 7316967 - Carg25753-RA Car19g00592 592
20 3552593 3556647 + Carg16152-RA Car20g00632 632
2 3762904 3766381 + CcPI632755_02g004190.1 Cco02g0419 419
2 3792907 3802783 + CcPI632755_02g004210.1 Cco02g0421 421
2 3805530 3809468 + CcPI632755_02g004220.1 Cco02g0422 422
2 22474843 22478734 + CcPI632755_02g012080.1 Cco02g1208 1208
2 3786601 3790104 + CePI673135_02g004040.1 Cec02g0404 404
2 3820343 3830221 + CePI673135_02g004050.1 Cec02g0405 405
2 3832231 3836132 + CePI673135_02g004060.1 Cec02g0406 406
2 27111127 27115031 + CePI673135_02g011600.1 Cec02g1160 1160
1 4563389 4564848 - Chy1G006470.1 Chy01g00647 647
1 4617431 4626218 + Chy1G006520.1 Chy01g00652 652
1 4649398 4659122 + Chy1G006530.1 Chy01g00653 653
1 4659404 4663315 + Chy1G006540.1 Chy01g00654 654
2 3631813 3635316 + ClG42_02g0040700.10 Clacu02g0407 407
2 3661774 3671587 + ClG42_02g0040800.10 Clacu02g0408 408
2 3674291 3678188 + ClG42_02g0040900.10 Clacu02g0409 409
2 22856160 22860059 + ClG42_02g0115300.10 Clacu02g1153 1153
2 3864321 3867824 + ClCG02G003820.2 Cla02g00399 399
2 3896275 3906736 + ClCG02G003830.2 Cla02g00400 400
2 3909002 3913127 + ClCG02G003840.1 Cla02g00401 401
2 22994722 22999309 + ClCG02G011110.1 Cla02g01085 1085
11 8975412 8976894 + CmaCh11G013560.1 Cma11g01356 1356
11 8981074 8988805 + CmaCh11G013580.1 Cma11g01358 1358
11 8997615 9004647 + CmaCh11G013590.1 Cma11g01359 1359
11 9005791 9010204 + CmaCh11G013600.1 Cma11g01360 1360
19 7517998 7526987 - CmaCh19G007580.1 Cma19g00758 758
19 7546969 7553004 - CmaCh19G007620.1 Cma19g00762 762
20 3410359 3414365 + CmaCh20G007320.1 Cma20g00732 732
1 15320037 15321220 - MELO3C013315.2.1 Cme01g01209 1209
1 15362667 15365174 - MELO3C013320.2.1 Cme01g01214 1214
1 15398386 15406886 + MELO3C013322.2.1 Cme01g01218 1218
1 15415621 15420150 + MELO3C013323.2.1 Cme01g01219 1219
1 4954475 4958351 + PI0005878.1 Cmetu01g0006 6
1 4992176 4996924 + PI0018293.1 Cmetu01g0333 333
11 12373775 12395191 - CmoCh11G017570.1 Cmo11g01757 1757
11 12398386 12405291 - CmoCh11G017580.1 Cmo11g01758 1758
11 12414326 12418304 - CmoCh11G017590.1 Cmo11g01759 1759
19 7783849 7792722 - CmoCh19G007710.1 Cmo19g00771 771
19 7813626 7815886 - CmoCh19G007740.1 Cmo19g00774 774
20 3614226 3618248 + CmoCh20G007290.1 Cmo20g00729 729
2 3627786 3631289 + CmPI595203_02g004030.1 Cmu02g0403 403
2 3657743 3667556 + CmPI595203_02g004040.1 Cmu02g0404 404
2 3670262 3674159 + CmPI595203_02g004050.1 Cmu02g0405 405
2 22720067 22723966 + CmPI595203_02g011150.1 Cmu02g1115 1115
3 28412780 28416504 - Conep03aG0147100.1 Cone3ag0976 976
8 8624044 8630926 + Conep08aG0090300.1 Cone8ag0877 877
8 10642036 10645271 - Conep08aG0134300.1 Cone8ag1305 1305
8 10648657 10650702 - Conep08aG0134500.1 Cone8ag1307 1307
10 9229824 9234346 - Conep10aG0126300.1 Cone10ag1228 1228
12 7624899 7631717 + Conep12aG0086900.1 Cone12ag0844 844
12 9639328 9641710 - Conep12aG0129000.1 Cone12ag1250 1250
12 9651821 9653604 - Conep12aG0129200.1 Cone12ag1252 1252
4 6360754 6365076 - Cp4.1LG04g04760.1 Cpe04g00610 610
4 6366608 6373559 - Cp4.1LG04g04810.1 Cpe04g00611 611
4 6382275 6386419 - Cp4.1LG04g04640.1 Cpe04g00612 612
15 6819267 6827022 - Cp4.1LG15g06130.1 Cpe15g00613 613
15 6902643 6903364 + Cp4.1LG15g06170.1 Cpe15g00616 616
16 5154578 5159120 - Cp4.1LG16g03410.1 Cpe16g00335 335
2 4198766 4202245 + CrPI670011_02g007370.1 Cre02g0737 737
2 4229029 4238828 + CrPI670011_02g007390.1 Cre02g0739 739
2 4241553 4245481 + CrPI670011_02g007400.1 Cre02g0740 740
2 24754828 24758730 + CrPI670011_02g014190.1 Cre02g1419 1419
7 1148400 1152847 - CsaV3_7G001300.1 Csa07g00130 130
7 1153965 1163231 - CsaV3_7G001310.1 Csa07g00131 131
7 1189678 1192647 + CsaV3_7G001340.1 Csa07g00134 134
7 1235155 1236998 + CsaV3_7G001390.1 Csa07g00139 139
2 3784909 3788632 + Hsped.02g03970.1 Hepe02g0397 397
2 3826959 3831455 + Hsped.02g03990.1 Hepe02g0399 399
10 11068664 11073272 + Lsi10G008100.1 Lsi10g00810 810
10 11138221 11141899 + Lsi10G008120.1 Lsi10g00812 812
11 20834099 20840361 - Lsi11G012240.1 Lsi11g01224 1224
11 20841418 20851438 - Lsi11G012250.1 Lsi11g01225 1225
11 20887851 20890158 + Lsi11G012280.1 Lsi11g01228 1228
11 21034129 21035746 - Lsi11G012390.1 Lsi11g01239 1239
1 18343444 18349838 - Sed0028199.1 Sed01g2461 2461
4 46667011 46672109 + Sed0003666.2 Sed04g3823 3823
2 5834624 5836995 + Tan0004770.1 Tan02g0633 633
2 5861542 5865600 + Tan0008356.1 Tan02g0637 637
2 5861542 5865600 + Tan0008356.2 Tan02g0638 638
2 5908929 5913817 + Tan0015190.1 Tan02g0642 642
3 2109843 2121573 - Vvi3g216 Vvi3g216 216
3 2122055 2122813 - Vvi3g217 Vvi3g217 217
3 2122898 2124044 - Vvi3g218 Vvi3g218 218
3 2124582 2127705 - Vvi3g219 Vvi3g219 219
3 2128295 2140641 - Vvi3g220 Vvi3g220 220
3 2141137 2162161 - Vvi3g221 Vvi3g221 221
3 2169179 2183369 - Vvi3g222 Vvi3g222 222
3 2183380 2192025 - Vvi3g223 Vvi3g223 223
3 2195624 2200680 + Vvi3g224 Vvi3g224 224
3 2202700 2207438 - Vvi3g225 Vvi3g225 225
       

DecoBrowse