Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g866 . . . . . Bpe12g00719 . . Cmo19g00510 . . . . . . . Cpe15g00390 . . . . . . . . . . . . . . . . . . . Csa07g00644 . Cme01g00159 . Blo13g00201 Bda15g00482 . . . . Bma08g00031 . . . . . . Car19g00369 . . . . . . . . . Cla09g01618 Cam09g1534 Cec09g1780 Cco09g1863 . . Cre01g0781 . . Chy01g00167 .
Vvi3g867 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g868 . . . . . . Bma05g00620 . . Cmo11g01450 . . . . Sed08g2798 Cpe04g00359 . Bhi05g00968 Tan02g1117 Cmetu01g2617 Lac12g0105 Hepe02g0695 . . Cla10g00935 Cam10g0956 Cec10g0994 Cco10g0953 Clacu10g0981 Cmu10g1766 Cre10g1139 . Cone9ag1431 . . . Csa07g00643 . Cme01g00160 . Blo13g00200 Bda15g00483 . . Bpe05g00445 . Bma08g00032 . . . Cma11g01678 . Car11g01166 . . . . . . . . . . Cla09g01617 Cam09g1535 Cec09g1779 Cco09g1862 . . Cre01g0782 . . Chy01g00168 .
Vvi3g869 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g870 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1012 Cone8ag1039 . . . Csa07g00640 . Cme01g00163 . . . . . . . . . . . . . . . . . . . . . . . . Cla09g01610 Cam09g1540 Cec09g1773 Cco09g1857 . . Cre01g0787 . . Chy01g00171 .
Vvi3g871 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g00934 . . Cco10g0952 Clacu10g0980 Cmu10g1765 Cre10g1138 Cone12ag1013 Cone8ag1040 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme07g02229
Vvi3g872 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1066 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g873 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g874 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g875 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 325 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
15 7993435 7999524 + Bda012311.1 Bda15g00482 482
15 8000686 8002770 - Bda012312.1 Bda15g00483 483
5 34134469 34137136 - XM_039032323.1 Bhi05g00968 968
13 8333260 8339544 + BLOR05481 Blo13g00200 200
13 8339993 8348170 - BLOR05482 Blo13g00201 201
5 37067915 37069799 - Bma021648.2 Bma05g00620 620
8 486581 492610 + Bma027024.1 Bma08g00031 31
8 493690 496649 - Bma027025.1 Bma08g00032 32
5 18844240 18846100 - Bpe017864.1 Bpe05g00445 445
12 12727568 12733669 - Bpe005980.4 Bpe12g00719 719
9 25711712 25721425 + CaPI482276_09g015340.1 Cam09g1534 1534
9 25723042 25725095 - CaPI482276_09g015350.1 Cam09g1535 1535
9 25827893 25835211 + CaPI482276_09g015400.1 Cam09g1540 1540
10 21550370 21561032 + CaPI482276_10g009560.1 Cam10g0956 956
11 9355556 9358041 + Carg23060-RA Car11g01166 1166
19 5544690 5554344 + Carg22795-RA Car19g00369 369
9 31733101 31740408 - CcPI632755_09g018570.1 Cco09g1857 1857
9 31838763 31840879 + CcPI632755_09g018620.1 Cco09g1862 1862
9 31842466 31851494 - CcPI632755_09g018630.1 Cco09g1863 1863
10 20726580 20735280 + CcPI632755_10g009520.1 Cco10g0952 952
10 20735619 20737387 + CcPI632755_10g009530.1 Cco10g0953 953
9 33374392 33381676 - CePI673135_09g017730.1 Cec09g1773 1773
9 33485262 33487099 + CePI673135_09g017790.1 Cec09g1779 1779
9 33488965 33500943 - CePI673135_09g017800.1 Cec09g1780 1780
10 22436011 22446806 + CePI673135_10g009940.1 Cec10g0994 994
1 1148108 1155765 + Chy1G001670.1 Chy01g00167 167
1 1157499 1159322 - Chy1G001680.1 Chy01g00168 168
1 1179079 1185580 + Chy1G001710.1 Chy01g00171 171
10 21160555 21169136 + ClG42_10g0098000.10 Clacu10g0980 980
10 21169482 21171263 + ClG42_10g0098100.10 Clacu10g0981 981
9 32250671 32258571 - ClCG09G016410.1 Cla09g01610 1610
9 32364199 32366855 + ClCG09G016470.1 Cla09g01617 1617
9 32367658 32377587 - ClCG09G016480.1 Cla09g01618 1618
10 22120504 22125489 + ClCG10G009760.1 Cla10g00934 934
10 22129447 22131840 + ClCG10G009770.2 Cla10g00935 935
11 11046967 11048651 - CmaCh11G016780.1 Cma11g01678 1678
1 1125620 1134543 + MELO3C018559.2.1 Cme01g00159 159
1 1135006 1137798 - MELO3C018560.2.1 Cme01g00160 160
1 1153880 1161458 + MELO3C018563.2.1 Cme01g00163 163
7 26446938 26452411 + MELO3C018042.2.1 Cme07g02229 2229
1 1293178 1295748 - PI0016958.1 Cmetu01g2617 2617
11 10203283 10204958 + CmoCh11G014500.1 Cmo11g01450 1450
19 6033380 6043200 + CmoCh19G005100.1 Cmo19g00510 510
10 21768460 21777043 + CmPI595203_10g017650.1 Cmu10g1765 1765
10 21777389 21779170 + CmPI595203_10g017660.1 Cmu10g1766 1766
3 29341417 29343301 + Conep03aG0156700.1 Cone3ag1066 1066
8 9581967 9588209 + Conep08aG0106700.1 Cone8ag1039 1039
8 9587058 9590269 - Conep08aG0106800.1 Cone8ag1040 1040
9 10638032 10641559 + Conep09aG0147400.1 Cone9ag1431 1431
12 8543405 8548423 + Conep12aG0104000.1 Cone12ag1012 1012
12 8548500 8551816 - Conep12aG0104100.1 Cone12ag1013 1013
4 4228017 4231294 + Cp4.1LG04g07280.1 Cpe04g00359 359
15 5115304 5124085 + Cp4.1LG15g03920.1 Cpe15g00390 390
1 8416989 8424989 + CrPI670011_01g007810.1 Cre01g0781 781
1 8425122 8428704 - CrPI670011_01g007820.1 Cre01g0782 782
1 8519963 8527296 + CrPI670011_01g007870.1 Cre01g0787 787
10 23473545 23482234 + CrPI670011_10g011380.1 Cre10g1138 1138
10 23482575 23484355 + CrPI670011_10g011390.1 Cre10g1139 1139
7 4601608 4608967 - CsaV3_7G007390.1 Csa07g00640 640
7 4626201 4629217 + CsaV3_7G007420.1 Csa07g00643 643
7 4629233 4639229 - CsaV3_7G007430.1 Csa07g00644 644
2 7632514 7635109 + Hsped.02g06950.1 Hepe02g0695 695
12 1210651 1212493 - Lag0014477.1 Lac12g0105 105
8 39485584 39489823 - Sed0017798.1 Sed08g2798 2798
2 22127002 22129664 - Tan0010671.1 Tan02g1117 1117
3 10920624 10933095 + Vvi3g866 Vvi3g866 866
3 10960905 10961374 - Vvi3g867 Vvi3g867 867
3 10961389 10963812 - Vvi3g868 Vvi3g868 868
3 10992553 11002274 - Vvi3g869 Vvi3g869 869
3 11113461 11140644 + Vvi3g870 Vvi3g870 870
3 11144132 11163077 - Vvi3g871 Vvi3g871 871
3 11175986 11177138 - Vvi3g872 Vvi3g872 872
3 11177146 11191978 - Vvi3g873 Vvi3g873 873
3 11194240 11238920 + Vvi3g874 Vvi3g874 874
3 11242016 11242220 + Vvi3g875 Vvi3g875 875
       

DecoBrowse