Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1189 . . . . . . . . . Cmo17g00574 . . . . . . . . . . . . . . Cla08g00450 Cam08g0879 Cec08g0460 Cco08g0582 Clacu08g0597 . Cre08g0419 Cone14ag0578 . . . . . . . . Blo07g00095 Bda11g00466 . . Bpe13g00733 . Bma06g01424 . . . . Cma17g00592 . Car17g00547 Cpe12g00504 . . . . . . . . . . . . . . . . . . .
Vvi5g1190 . . . . . . . . . . . Cma14g01465 . Car14g01301 . . Cpe03g01233 . . . . . . . . . . . . . . . . . . . . . Cme07g01901 . Blo07g00070 Bda11g00442 . . Bpe13g00734 . Bma06g01423 Sed09g0135 . Cmo14g01504 . . . . . . Bhi12g02569 Tan06g2212 Cmetu10g0535 Lac12g1942 Hepe03g0423 . Lcy13g0545 . . . . . . . . . . .
Vvi5g1191 . . . . . Bpe14g01042 . . . . Cma06g01662 . Car06g01405 . . . . . . . . . . . . . . . . . . Cone14ag0577 . . . . . . Cme07g01902 . Blo07g00091 Bda11g00464 . . Bpe13g00735 . Bma06g01422 . Cmo06g01657 . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi5g1192 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi5g1193 . . . . . . . . . . Cma06g01664 . Car06g01406 Car14g01297 . Cpe08g00077 Cpe03g01232 . . . . . . . . . . . . . . Cone14ag0576 . . Cone11ag0614 . . . Cme07g01904 . Blo07g00090 . . . . . Bma06g01421 . Cmo06g01658 . . . Car08g00063 . . Cpe17g00989 . . . . . . . . . . . . . . . . . .
Vvi5g1194 . . . . . . . . . . . . . Car14g01271 . . Cpe03g01211 . . . . . . . . . . . . . . Cone14ag0575 . . . . . . Cme07g01932 . . . Bda13g00257 . . . Bma06g01420 . . . . . . . . . . . . . . . . Cla07g01448 Cam07g1550 Cec07g1645 Cco07g1608 Clacu07g1538 Cmu07g1507 Cre07g1884 . . . Cme11g02478
Vvi5g1195 Blo01g00201 . . Bda08g00149 . . . . Cmo08g00213 Cmo17g00577 . . . . . . . . . . . . . . Cla08g00460 Cam08g0887 Cec08g0471 Cco08g0586 Clacu08g0604 . Cre08g0424 Cone14ag0574 . . . . . . . . . . . Bpe05g00982 . . . . . . . Cma17g00596 Car08g00187 Car17g00550 Cpe12g00507 Cpe17g01099 . . . . . . . . . . . . . . . . . .
Vvi5g1196 . Blo12g00256 Bda03g00980 . Bpe04g00907 . . . . . Cma06g01680 . Car06g01424 . . Cpe08g00062 . . . . . . . . . . . . . . . . . . . . . . Cme07g01931 . . . . . . . . . Cmo06g01672 . . . . . . . . . . . . . . Cla07g01449 . . . . . . . . . .
Vvi5g1197 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla07g01482 Cam07g1579 Cec07g1678 Cco07g1639 Clacu07g1570 Cmu07g1538 Cre07g1915 . . . .
Vvi5g1198 . . . . . . . . . . Cma06g01651 Cma14g01468 Car06g01402 Car14g01304 Sed12g0631 Cpe08g00080 Cpe03g01237 Bhi01g02695 Tan10g1290 Cmetu07g1206 . Hepe05g1226 . Lcy11g1139 . . . . . . . . . . Cone11ag0615 . . . Cme07g01895 . . Bda11g00459 . . Bpe13g00737 . Bma06g01395 . Cmo06g01654 Cmo14g01507 . . . . . . . . . . . . . Cla07g01484 Cam07g1580 Cec07g1680 Cco07g1640 Clacu07g1571 Cmu07g1539 Cre07g1916 . . . .
   
Previous Page 604 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
3 8849932 8853688 + Bda016993.1 Bda03g00980 980
8 1419256 1424895 + Bda033793 Bda08g00149 149
11 4694484 4708361 - Bda005186.1 Bda11g00442 442
11 4838764 4841083 - Bda033031 Bda11g00459 459
11 4896839 4898852 - Bda033032 Bda11g00464 464
11 4917509 4917712 - Bda005204.1 Bda11g00466 466
13 3237789 3239543 - Bda032843 Bda13g00257 257
1 66727539 66735451 - XM_039041274.1 Bhi01g02695 2695
12 79568410 79583204 - XM_039018647.1 Bhi12g02569 2569
1 2657711 2667085 - BLOR00201 Blo01g00201 201
7 1043462 1058442 - BLOR18002 Blo07g00070 70
7 1307019 1307698 + BLOR18022 Blo07g00090 90
7 1310311 1314867 - BLOR18023 Blo07g00091 91
7 1370597 1375891 - BLOR18027 Blo07g00095 95
12 15766109 15769232 - BLOR04275 Blo12g00256 256
6 50703826 50706014 + Bma024510.1 Bma06g01395 1395
6 50942475 50947149 + Bma024535.1 Bma06g01420 1420
6 50955939 50956611 + Bma024536.1 Bma06g01421 1421
6 50958728 50960721 - Bma024537.1 Bma06g01422 1422
6 50961820 50980692 + Bma024538.1 Bma06g01423 1423
6 50981096 50984737 - Bma031330 Bma06g01424 1424
4 6066621 6070363 + Bpe015571.1 Bpe04g00907 907
5 22642353 22654896 - Bpe018393.2 Bpe05g00982 982
13 13887965 13891528 + Bpe010430.1 Bpe13g00733 733
13 13891971 13915867 - Bpe010431.1 Bpe13g00734 734
13 13917840 13919311 + Bpe025238 Bpe13g00735 735
13 13934348 13936673 + Bpe025239 Bpe13g00737 737
14 7795068 7796942 - Bpe014416.1 Bpe14g01042 1042
7 30153670 30160139 - CaPI482276_07g015500.1 Cam07g1550 1550
7 30524813 30525619 - CaPI482276_07g015790.1 Cam07g1579 1579
7 30530439 30535932 + CaPI482276_07g015800.1 Cam07g1580 1580
8 13006005 13010661 + CaPI482276_08g008790.1 Cam08g0879 879
8 13182191 13188980 + CaPI482276_08g008870.1 Cam08g0887 887
6 10062529 10066357 - Carg15474-RA Car06g01402 1402
6 10081474 10083961 + Carg15471-RA Car06g01405 1405
6 10085450 10086480 - Carg15470-RA Car06g01406 1406
6 10158765 10162642 + Carg15451-RA Car06g01424 1424
8 371475 374353 + Carg04905-RA Car08g00063 63
8 1172637 1179194 - Carg05033-RA Car08g00187 187
14 10904947 10910993 - Carg06592-RA Car14g01271 1271
14 11032533 11033532 + Carg27255-RA Car14g01297 1297
14 11040171 11055223 + Carg27251-RA Car14g01301 1301
14 11064535 11069862 + Carg27248-RA Car14g01304 1304
17 5101127 5106333 + Carg22611-RA Car17g00547 547
17 5131842 5138858 + Carg22608-RA Car17g00550 550
7 30103784 30110222 - CcPI632755_07g016080.1 Cco07g1608 1608
7 30495946 30496752 - CcPI632755_07g016390.1 Cco07g1639 1639
7 30501708 30507263 + CcPI632755_07g016400.1 Cco07g1640 1640
8 15086139 15090509 + CcPI632755_08g005820.1 Cco08g0582 582
8 15248446 15255250 + CcPI632755_08g005860.1 Cco08g0586 586
7 32016267 32022744 - CePI673135_07g016450.1 Cec07g1645 1645
7 32403743 32404549 - CePI673135_07g016780.1 Cec07g1678 1678
7 32410742 32414972 + CePI673135_07g016800.1 Cec07g1680 1680
8 13558852 13563374 + CePI673135_08g004600.1 Cec08g0460 460
8 13803545 13810325 + CePI673135_08g004710.1 Cec08g0471 471
7 30009975 30016469 - ClG42_07g0153800.10 Clacu07g1538 1538
7 30379031 30379837 - ClG42_07g0157000.10 Clacu07g1570 1570
7 30382518 30390276 + ClG42_07g0157100.10 Clacu07g1571 1571
8 13237937 13242482 + ClG42_08g0059700.10 Clacu08g0597 597
8 13457646 13464412 + ClG42_08g0060400.10 Clacu08g0604 604
7 31722852 31729903 - ClCG07G015260.1 Cla07g01448 1448
7 31738607 31744557 - ClCG07G015270.2 Cla07g01449 1449
7 32108043 32108849 - ClCG07G015580.1 Cla07g01482 1482
7 32112193 32119596 + ClCG07G015595.1 Cla07g01484 1484
8 13722440 13727580 + ClCG08G004320.2 Cla08g00450 450
8 13941413 13948492 + ClCG08G004430.2 Cla08g00460 460
6 10238872 10240723 - CmaCh06G016510.1 Cma06g01651 1651
6 10278915 10281360 + CmaCh06G016620.1 Cma06g01662 1662
6 10283073 10284212 - CmaCh06G016640.1 Cma06g01664 1664
6 10355765 10359761 + CmaCh06G016800.1 Cma06g01680 1680
14 11151801 11175335 + CmaCh14G014650.1 Cma14g01465 1465
14 11181982 11189519 + CmaCh14G014680.1 Cma14g01468 1468
17 4905911 4911040 + CmaCh17G005920.1 Cma17g00592 592
17 4947053 4954411 + CmaCh17G005960.1 Cma17g00596 596
7 24242062 24248818 - MELO3C017722.2.1 Cme07g01895 1895
7 24267229 24284556 - MELO3C017728.2.1 Cme07g01901 1901
7 24287646 24290729 + MELO3C017729.2.1 Cme07g01902 1902
7 24298304 24300738 - MELO3C017731.2.1 Cme07g01904 1904
7 24520806 24526016 + MELO3C017756.2.1 Cme07g01931 1931
7 24529207 24536334 + MELO3C017757.2.1 Cme07g01932 1932
11 31423033 31423938 + MELO3C022469.2.1 Cme11g02478 2478
7 2648261 2655289 + PI0025521.2 Cmetu07g1206 1206
10 17377578 17383120 - PI0011594.1 Cmetu10g0535 535
6 11472421 11476824 - CmoCh06G016540.1 Cmo06g01654 1654
6 11491223 11493702 + CmoCh06G016570.1 Cmo06g01657 1657
6 11494315 11496384 - CmoCh06G016580.1 Cmo06g01658 1658
6 11569200 11572533 + CmoCh06G016720.1 Cmo06g01672 1672
8 1264553 1271630 - CmoCh08G002130.1 Cmo08g00213 213
14 12060666 12076842 + CmoCh14G015040.1 Cmo14g01504 1504
14 12084589 12090814 + CmoCh14G015070.1 Cmo14g01507 1507
17 5898920 5904200 + CmoCh17G005740.1 Cmo17g00574 574
17 5927996 5935796 + CmoCh17G005770.1 Cmo17g00577 577
7 30261669 30268164 - CmPI595203_07g015070.1 Cmu07g1507 1507
7 30631117 30631923 - CmPI595203_07g015380.1 Cmu07g1538 1538
7 30636878 30642361 + CmPI595203_07g015390.1 Cmu07g1539 1539
11 3829056 3830277 - Conep11aG0063000.1 Cone11ag0614 614
11 3835545 3839184 + Conep11aG0063100.1 Cone11ag0615 615
14 2840263 2846368 - Conep14aG0058800.1 Cone14ag0574 574
14 2850891 2854472 + Conep14aG0058900.1 Cone14ag0575 575
14 2858774 2860103 + Conep14aG0059000.1 Cone14ag0576 576
14 2861607 2863459 - Conep14aG0059100.1 Cone14ag0577 577
14 2865379 2868951 - Conep14aG0059200.1 Cone14ag0578 578
3 9888417 9894809 - Cp4.1LG03g13030.1 Cpe03g01211 1211
3 10005960 10007465 + Cp4.1LG03g12710.1 Cpe03g01232 1232
3 10009373 10029081 + Cp4.1LG03g12740.1 Cpe03g01233 1233
3 10040294 10044565 + Cp4.1LG03g12750.1 Cpe03g01237 1237
8 417618 420958 - Cp4.1LG08g06080.1 Cpe08g00062 62
8 496056 498227 + Cp4.1LG08g05930.1 Cpe08g00077 77
8 517071 520160 + Cp4.1LG08g06010.1 Cpe08g00080 80
12 4943637 4949040 + Cp4.1LG12g05040.1 Cpe12g00504 504
12 4972647 4981043 + Cp4.1LG12g05060.1 Cpe12g00507 507
17 7509464 7512123 + Cp4.1LG17g09750.1 Cpe17g00989 989
17 8344123 8350900 - Cp4.1LG17g11070.1 Cpe17g01099 1099
7 34260065 34266519 - CrPI670011_07g018840.1 Cre07g1884 1884
7 34638158 34638607 - CrPI670011_07g019150.1 Cre07g1915 1915
7 34643443 34648885 + CrPI670011_07g019160.1 Cre07g1916 1916
8 14151062 14155594 + CrPI670011_08g004190.1 Cre08g0419 419
8 14396679 14403453 + CrPI670011_08g004240.1 Cre08g0424 424
3 6323329 6337964 - Hsped.03g04230.1 Hepe03g0423 423
5 59101689 59107908 + Hsped.05g12260.1 Hepe05g1226 1226
12 36197471 36208968 + Lag0016314.1 Lac12g1942 1942
11 33731406 33738458 + Maker00005132 Lcy11g1139 1139
13 6880966 6895340 - Maker00023694 Lcy13g0545 545
9 1033318 1042968 + Sed0012554.1 Sed09g0135 135
12 3760928 3764260 + Sed0021868.2 Sed12g0631 631
6 72465731 72482225 + Tan0015152.1 Tan06g2212 2212
10 14943529 14951411 - Tan0008080.1 Tan10g1290 1290
5 21911992 21923514 + Vvi5g1189 Vvi5g1189 1189
5 21924401 21956033 - Vvi5g1190 Vvi5g1190 1190
5 21967316 21971056 + Vvi5g1191 Vvi5g1191 1191
5 21972249 21973645 - Vvi5g1192 Vvi5g1192 1192
5 21973653 21975210 - Vvi5g1193 Vvi5g1193 1193
5 21986538 22008670 - Vvi5g1194 Vvi5g1194 1194
5 22024943 22037763 + Vvi5g1195 Vvi5g1195 1195
5 22039046 22055956 - Vvi5g1196 Vvi5g1196 1196
5 22067896 22069201 + Vvi5g1197 Vvi5g1197 1197
5 22071838 22077330 + Vvi5g1198 Vvi5g1198 1198
       

DecoBrowse