Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g446 . . Bda06g00513 . Bpe12g00518 . . . Cmo13g01107 . Cma10g00289 Cma11g00218 Car10g00271 Car11g00197 Sed08g0288 . Cpe04g01449 Bhi02g00081 Tan09g2023 Cmetu02g0745 . Hepe09g0285 . . Cla06g01531 Cam06g1688 Cec06g1750 Cco06g1748 Clacu06g1655 Cmu06g1602 Cre06g2414 . . Cone13ag0029 . . . Chy12g01483 Cme12g01924 . . . . . . . . . Cmo10g00308 Cmo11g00221 Cma13g01062 . Car13g00898 . . Cpe18g00713 Bhi08g01067 . . Lac10g0179 Hepe07g2448 . . Cla04g01143 Cam04g1196 Cec01g1708 Cco01g1753 Clacu04g1222 Cmu04g1202 Cre01g1500 Lsi06g01402 Csa01g00341 Chy02g02401 Cme02g01813
Vvi17g447 . . . . . . . . Cmo13g01108 . . . . . . Cpe20g00085 . . . . . . . . . . . . . . . . Cone16ag0219 . . Lsi02g00134 Csa01g00616 Chy12g01484 Cme12g01925 . . Bda11g01767 . . . . . Sed08g2132 . . Cma13g01063 . Car13g00899 . . . Bhi08g01068 Tan05g2342 Cmetu12g1898 Lac10g0178 Hepe07g2449 . . . . . . . . . . . . .
Vvi17g448 . Blo16g00207 . Bda15g00630 Bpe12g00519 . . . Cmo13g00936 . Cma10g00290 Cma11g00217 Car10g00272 Car11g00196 Sed12g2018 Cpe20g00222 Cpe04g01451 Bhi02g00082 Tan09g2024 Cmetu02g1024 . Hepe09g0284 . . Cla06g01532 Cam06g1689 Cec06g1751 Cco06g1749 Clacu06g1656 Cmu06g1603 Cre06g2415 . Cone16ag0131 Cone13ag0030 Cone19ag0038 Lsi02g00346 . . Cme12g01723 . . . . . . . Bma08g00249 Sed08g2544 Cmo10g00309 Cmo11g00219 Cma13g00908 . Car13g00748 . . . Bhi08g01447 Tan05g2046 Cmetu12g1297 Lac10g0416 Hepe07g2255 . . Cla01g01399 Cam01g1461 Cec01g1502 . Clacu01g1485 Cmu01g1380 Cre01g1296 Lsi06g01403 Csa01g00342 Chy02g02400 Cme02g01814
Vvi17g449 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g450 . . . Bda15g00629 . . . . Cmo13g01109 . . . . . . Cpe20g00084 . . . . . . . . . . . . . . . . Cone16ag0218 . . Lsi02g00131 Csa01g00614 Chy12g01486 Cme12g01927 . . . . . . . Bma08g00248 . . . Cma13g01064 . Car13g00900 . . . Bhi08g01070 . . . Hepe07g2450 . . Cla04g01145 . . . . . . . . . .
Vvi17g451 . . . . . . . . Cmo13g01110 Cmo18g00009 . . . . . . . . . . . . . . . . . . . . . . Cone16ag0217 . . Lsi02g00130 Csa01g00613 Chy12g01487 Cme12g01928 . . Bda11g01766 . . . . . . . . Cma13g01065 Cma18g00008 Car13g00901 . Cpe09g01165 . Bhi08g01071 . . Lac10g0176 Hepe07g2451 . . . . . . . . . . . . .
Vvi17g452 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g453 . . . . . . . . Cmo13g01111 . . . . . . Cpe20g00083 . . . . . . . . . . . . . . . . Cone16ag0216 . . Lsi02g00129 Csa01g00612 Chy12g01488 Cme12g01929 . . Bda11g01765 . . . . . Sed08g2128 . . Cma13g01067 . Car13g00902 . . . Bhi08g01072 Tan05g2345 Cmetu12g1181 Lac10g0175 Hepe07g2452 . . Cla04g01146 Cam04g1200 Cec01g1712 Cco01g1756 Clacu04g1227 Cmu04g1207 Cre01g1504 . . . .
Vvi17g454 . . Bda06g00518 Bda15g00628 Bpe12g00520 . . Bma12g00961 . . Cma10g00291 Cma11g00216 Car10g00273 Car11g00195 . . Cpe04g01452 Bhi02g00084 Tan09g2026 . . . . . Cla06g01533 Cam06g1691 Cec06g1754 Cco06g1752 Clacu06g1658 Cmu06g1605 Cre06g2417 . . . Cone19ag0039 . . . . . Blo15g00342 . . Bpe07g00752 . . Bma08g00247 . Cmo10g00310 Cmo11g00218 . . . . . Cpe18g00712 . . . . . . . . . . . . . . Lsi06g01405 Csa01g00306 Chy02g02432 Cme02g01819
Vvi17g455 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 2010 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
6 7367811 7370063 + Bda033762 Bda06g00513 513
6 7453731 7459625 + Bda023773.1 Bda06g00518 518
11 52479432 52482407 - Bda008685.1 Bda11g01765 1765
11 52484888 52491975 - Bda008686.1 Bda11g01766 1766
11 52500890 52505129 - Bda008687.1 Bda11g01767 1767
15 9421822 9425508 - Bda012472.1 Bda15g00628 628
15 9431548 9433295 + Bda012473.1 Bda15g00629 629
15 9441141 9442703 + Bda012474.1 Bda15g00630 630
2 1375725 1378828 - XM_039022941.1 Bhi02g00081 81
2 1384663 1386602 - XM_039024114.1 Bhi02g00082 82
2 1630381 1638990 + XM_039024748.1 Bhi02g00084 84
8 34729657 34732356 + XM_039039607.1 Bhi08g01067 1067
8 34732657 34736020 + XM_039039609.1 Bhi08g01068 1068
8 34806912 34809363 - XM_039039500.1 Bhi08g01070 1070
8 34841381 34845982 + XM_039040140.1 Bhi08g01071 1071
8 34863502 34868149 + XM_039038035.1 Bhi08g01072 1072
8 42511148 42513402 + XM_039038827.1 Bhi08g01447 1447
15 4162623 4169642 - BLOR06736 Blo15g00342 342
16 4651416 4652921 + BLOR07455 Blo16g00207 207
8 3064727 3068499 - Bma027259.1 Bma08g00247 247
8 3100752 3102499 + Bma027264.1 Bma08g00248 248
8 3108698 3110260 + Bma027265.1 Bma08g00249 249
12 41587161 41590735 + Bma008303.2 Bma12g00961 961
7 14056632 14060209 + Bpe021598.1 Bpe07g00752 752
12 11027190 11029588 + Bpe005781.1 Bpe12g00518 518
12 11032525 11034087 - Bpe005782.1 Bpe12g00519 519
12 11058837 11066117 + Bpe005783.1 Bpe12g00520 520
1 28185939 28197204 - CaPI482276_01g014610.1 Cam01g1461 1461
4 26038357 26046396 + CaPI482276_04g011960.1 Cam04g1196 1196
4 26085896 26090709 + CaPI482276_04g012000.1 Cam04g1200 1200
6 28261538 28264265 - CaPI482276_06g016880.1 Cam06g1688 1688
6 28270363 28271931 - CaPI482276_06g016890.1 Cam06g1689 1689
6 28307792 28312768 + CaPI482276_06g016910.1 Cam06g1691 1691
10 1291713 1294364 - Carg17872-RA Car10g00271 271
10 1295532 1297121 - Carg17871-RA Car10g00272 272
10 1300684 1306547 + Carg17870-RA Car10g00273 273
11 1127495 1131890 - Carg09194-RA Car11g00195 195
11 1133328 1134917 + Carg09193-RA Car11g00196 196
11 1137936 1141889 + Carg09192-RA Car11g00197 197
13 8515405 8516922 - Carg07698-RA Car13g00748 748
13 9356004 9356952 + Carg04773-RA Car13g00898 898
13 9357792 9363229 + Carg04772-RA Car13g00899 899
13 9369615 9371460 - Carg04771-RA Car13g00900 900
13 9375614 9380135 + Carg04770-RA Car13g00901 901
13 9380511 9384921 + Carg04769-RA Car13g00902 902
1 30284527 30296998 + CcPI632755_01g017530.1 Cco01g1753 1753
1 30336654 30341429 + CcPI632755_01g017560.1 Cco01g1756 1756
6 27966798 27969539 - CcPI632755_06g017480.1 Cco06g1748 1748
6 27975656 27977221 - CcPI632755_06g017490.1 Cco06g1749 1749
6 28013378 28017239 + CcPI632755_06g017520.1 Cco06g1752 1752
1 29630428 29632549 - CePI673135_01g015020.1 Cec01g1502 1502
1 31716187 31724251 + CePI673135_01g017080.1 Cec01g1708 1708
1 31763737 31768596 + CePI673135_01g017120.1 Cec01g1712 1712
6 31024962 31027689 - CePI673135_06g017500.1 Cec06g1750 1750
6 31033647 31035215 - CePI673135_06g017510.1 Cec06g1751 1751
6 31071261 31075149 + CePI673135_06g017540.1 Cec06g1754 1754
2 27760165 27761733 + Chy2G046670.1 Chy02g02400 2400
2 27765988 27768755 + Chy2G046680.1 Chy02g02401 2401
2 27990624 27998382 + Chy2G046990.1 Chy02g02432 2432
12 18727904 18730515 + Chy12G220830.1 Chy12g01483 1483
12 18732631 18737179 + Chy12G220840.1 Chy12g01484 1484
12 18753705 18755699 - Chy12G220860.1 Chy12g01486 1486
12 18763428 18767692 + Chy12G220870.1 Chy12g01487 1487
12 18768785 18773231 + Chy12G220880.1 Chy12g01488 1488
1 26943156 26954217 - ClG42_01g0148500.10 Clacu01g1485 1485
4 26388732 26396704 + ClG42_04g0122200.10 Clacu04g1222 1222
4 26436115 26441018 + ClG42_04g0122700.10 Clacu04g1227 1227
6 27318699 27321422 - ClG42_06g0165500.10 Clacu06g1655 1655
6 27327444 27329012 - ClG42_06g0165600.10 Clacu06g1656 1656
6 27361098 27364716 + ClG42_06g0165800.10 Clacu06g1658 1658
1 28423998 28435305 - ClCG01G014130.1 Cla01g01399 1399
4 26624996 26633307 + ClCG04G011640.1 Cla04g01143 1143
4 26653420 26655441 - ClCG04G011660.1 Cla04g01145 1145
4 26663833 26685366 + ClCG04G011670.2 Cla04g01146 1146
6 28866176 28869546 - ClCG06G015520.2 Cla06g01531 1531
6 28875341 28876909 - ClCG06G015530.1 Cla06g01532 1532
6 28888423 28918440 + ClCG06G015540.2 Cla06g01533 1533
10 1281832 1285147 - CmaCh10G002890.1 Cma10g00289 289
10 1286483 1288144 - CmaCh10G002900.1 Cma10g00290 290
10 1290673 1298386 + CmaCh10G002910.1 Cma10g00291 291
11 1095108 1100243 - CmaCh11G002160.1 Cma11g00216 216
11 1101592 1103181 + CmaCh11G002170.1 Cma11g00217 217
11 1105995 1109284 + CmaCh11G002180.1 Cma11g00218 218
13 7271261 7276776 - CmaCh13G009080.1 Cma13g00908 908
13 8051454 8053980 + CmaCh13G010620.1 Cma13g01062 1062
13 8054549 8060415 + CmaCh13G010630.1 Cma13g01063 1063
13 8065753 8067575 - CmaCh13G010640.1 Cma13g01064 1064
13 8070943 8076412 + CmaCh13G010650.1 Cma13g01065 1065
13 8076664 8086020 + CmaCh13G010670.1 Cma13g01067 1067
18 30009 34873 + CmaCh18G000080.1 Cma18g00008 8
2 24898747 24901932 - MELO3C017242.2.1 Cme02g01813 1813
2 24906255 24908243 - MELO3C017241.2.1 Cme02g01814 1814
2 24944942 24953769 + MELO3C017236.2.1 Cme02g01819 1819
12 24012290 24015393 - MELO3C002235.2.1 Cme12g01723 1723
12 25270241 25271941 + MELO3C002046.2.1 Cme12g01924 1924
12 25272751 25277409 + MELO3C002045.2.1 Cme12g01925 1925
12 25293372 25295786 - MELO3C002043.2.1 Cme12g01927 1927
12 25302903 25307683 + MELO3C002042.2.1 Cme12g01928 1928
12 25309166 25314168 + MELO3C002041.2.1 Cme12g01929 1929
2 23240357 23245675 - PI0015437.1 Cmetu02g0745 745
2 23249163 23251696 - PI0027165.1 Cmetu02g1024 1024
12 826384 827955 - PI0018884.1 Cmetu12g1181 1181
12 2263327 2264831 + PI0028553.1 Cmetu12g1297 1297
12 867039 872293 - PI0011490.1 Cmetu12g1898 1898
10 1369816 1373130 - CmoCh10G003080.1 Cmo10g00308 308
10 1374059 1375648 - CmoCh10G003090.1 Cmo10g00309 309
10 1378907 1386168 + CmoCh10G003100.1 Cmo10g00310 310
11 1095378 1100076 - CmoCh11G002180.1 Cmo11g00218 218
11 1101007 1102596 + CmoCh11G002190.1 Cmo11g00219 219
11 1105614 1108526 + CmoCh11G002210.1 Cmo11g00221 221
13 8213747 8215264 - CmoCh13G009360.1 Cmo13g00936 936
13 9067595 9069513 + CmoCh13G011070.1 Cmo13g01107 1107
13 9070087 9076228 + CmoCh13G011080.1 Cmo13g01108 1108
13 9082814 9084507 - CmoCh13G011090.1 Cmo13g01109 1109
13 9088465 9093855 + CmoCh13G011100.1 Cmo13g01110 1110
13 9093955 9098358 + CmoCh13G011110.1 Cmo13g01111 1111
18 31575 36090 + CmoCh18G000090.1 Cmo18g00009 9
1 27286958 27298010 - CmPI595203_01g013800.1 Cmu01g1380 1380
4 26573635 26578410 + CmPI595203_04g012020.1 Cmu04g1202 1202
4 26618259 26623152 + CmPI595203_04g012070.1 Cmu04g1207 1207
6 27226793 27230136 - CmPI595203_06g016020.1 Cmu06g1602 1602
6 27236186 27237754 - CmPI595203_06g016030.1 Cmu06g1603 1603
6 27273586 27277453 + CmPI595203_06g016050.1 Cmu06g1605 1605
13 179997 182847 - Conep13aG0003100.1 Cone13ag0029 29
13 183795 185918 - Conep13aG0003200.1 Cone13ag0030 30
16 745128 746914 - Conep16aG0013300.1 Cone16ag0131 131
16 1478744 1481610 - Conep16aG0022000.1 Cone16ag0216 216
16 1489691 1500195 - Conep16aG0022100.1 Cone16ag0217 217
16 1516225 1518121 + Conep16aG0022200.1 Cone16ag0218 218
16 1531219 1537235 - Conep16aG0022300.1 Cone16ag0219 219
19 257289 259214 - Conep19aG0004100.1 Cone19ag0038 38
19 260939 265199 + Conep19aG0004200.1 Cone19ag0039 39
4 11570360 11574485 - Cp4.1LG04g14470.1 Cpe04g01449 1449
4 11577452 11579041 - Cp4.1LG04g14650.1 Cpe04g01451 1451
4 11580253 11585333 + Cp4.1LG04g14540.1 Cpe04g01452 1452
9 9879263 9884339 - Cp4.1LG09g11630.1 Cpe09g01165 1165
18 7013107 7031186 - Cp4.1LG18g07200.1 Cpe18g00712 712
18 7036903 7040972 + Cp4.1LG18g07130.1 Cpe18g00713 713
20 433845 443738 - Cp4.1LG20g00890.1 Cpe20g00083 83
20 447622 449886 + Cp4.1LG20g00710.1 Cpe20g00084 84
20 455233 460873 - Cp4.1LG20g00880.1 Cpe20g00085 85
20 1259926 1261443 + Cp4.1LG20g02080.1 Cpe20g00222 222
1 26209369 26211039 - CrPI670011_01g012960.1 Cre01g1296 1296
1 28234470 28242510 + CrPI670011_01g015000.1 Cre01g1500 1500
1 28283643 28288527 + CrPI670011_01g015040.1 Cre01g1504 1504
6 32022807 32025552 - CrPI670011_06g024140.1 Cre06g2414 2414
6 32031738 32033306 - CrPI670011_06g024150.1 Cre06g2415 2415
6 32070076 32074766 + CrPI670011_06g024170.1 Cre06g2417 2417
1 1910158 1919265 - CsaV3_1G003060.1 Csa01g00306 306
1 2130722 2134358 - CsaV3_1G003410.1 Csa01g00341 341
1 2137123 2140067 - CsaV3_1G003420.1 Csa01g00342 342
1 3905202 3909604 - CsaV3_1G006120.1 Csa01g00612 612
1 3910631 3914888 - CsaV3_1G006130.1 Csa01g00613 613
1 3922185 3924566 + CsaV3_1G006140.1 Csa01g00614 614
1 3940621 3945617 - CsaV3_1G006160.1 Csa01g00616 616
7 66944583 66946097 - Hsped.07g22550.1 Hepe07g2255 2255
7 68827158 68829096 + Hsped.07g24480.1 Hepe07g2448 2448
7 68832115 68837947 + Hsped.07g24490.1 Hepe07g2449 2449
7 68848640 68850539 - Hsped.07g24500.1 Hepe07g2450 2450
7 68863093 68867783 + Hsped.07g24510.1 Hepe07g2451 2451
7 68868519 68874718 + Hsped.07g24520.1 Hepe07g2452 2452
9 2442369 2444602 + Hsped.09g02840.1 Hepe09g0284 284
9 2448414 2451173 + Hsped.09g02850.1 Hepe09g0285 285
10 1323772 1327871 - Lag0024220.1 Lac10g0175 175
10 1329183 1334230 - Lag0024221.1 Lac10g0176 176
10 1359898 1364109 - Lag0024223.1 Lac10g0178 178
10 1366290 1368236 - Lag0024224.1 Lac10g0179 179
10 3267739 3269526 + Lag0024461.1 Lac10g0416 416
2 1042961 1047925 - Lsi02G001290.1 Lsi02g00129 129
2 1049488 1054315 - Lsi02G001300.1 Lsi02g00130 130
2 1069273 1072329 + Lsi02G001310.1 Lsi02g00131 131
2 1092841 1098035 - Lsi02G001340.1 Lsi02g00134 134
2 2942389 2955347 + Lsi02G003460.1 Lsi02g00346 346
6 24572437 24575798 - Lsi06G014020.1 Lsi06g01402 1402
6 24580561 24582129 - Lsi06G014030.1 Lsi06g01403 1403
6 24599406 24607999 + Lsi06G014050.1 Lsi06g01405 1405
8 1707122 1709914 + Sed0010385.1 Sed08g0288 288
8 35251344 35256422 - Sed0013495.1 Sed08g2128 2128
8 35298370 35310466 - Sed0027469.1 Sed08g2132 2132
8 38093326 38095822 - Sed0012253.1 Sed08g2544 2544
12 31048727 31051317 + Sed0019900.1 Sed12g2018 2018
5 70725131 70728166 - Tan0020248.1 Tan05g2046 2046
5 74854290 74862995 + Tan0013351.1 Tan05g2342 2342
5 74896056 74900840 + Tan0016906.1 Tan05g2345 2345
9 70835222 70838012 - Tan0015813.1 Tan09g2023 2023
9 70843815 70845886 - Tan0007553.1 Tan09g2024 2024
9 70858958 70868488 + Tan0008598.2 Tan09g2026 2026
17 5544534 5548284 - Vvi17g446 Vvi17g446 446
17 5559255 5576076 + Vvi17g447 Vvi17g447 447
17 5578564 5580163 - Vvi17g448 Vvi17g448 448
17 5591660 5598435 - Vvi17g449 Vvi17g449 449
17 5600224 5602845 - Vvi17g450 Vvi17g450 450
17 5620015 5627317 + Vvi17g451 Vvi17g451 451
17 5628040 5629396 - Vvi17g452 Vvi17g452 452
17 5631965 5637919 + Vvi17g453 Vvi17g453 453
17 5641389 5648710 + Vvi17g454 Vvi17g454 454
17 5652104 5658572 - Vvi17g455 Vvi17g455 455
       

DecoBrowse