Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g316 . Blo15g00411 Bda06g00452 . Bpe07g00685 . . Bma12g00889 Cmo19g00836 Cmo11g01804 Cma02g00307 Cma20g00709 Car02g00186 Car20g00608 Sed08g1873 Cpe04g00647 Cpe15g00659 Bhi05g01540 Tan02g0539 Cmetu01g0007 Lac12g0436 Hepe02g0344 . . Cla02g00326 Cam02g0334 Cec02g0334 Cco02g0338 Clacu02g0324 Cmu02g0323 Cre02g0656 . Cone8ag1346 . . . Csa07g00217 . . Blo04g00614 Blo13g00460 . . Bpe15g00771 . Bma03g00650 Bma08g00708 . Cmo02g00302 Cmo20g00703 . Cma19g00819 Car11g01431 Car19g00636 Cpe16g00357 Cpe05g01332 . . . . . . . Cla02g01053 Cam02g1125 Cec02g1128 Cco02g1167 Clacu02g1113 Cmu02g1076 Cre02g1380 Lsi11g01312 . Chy01g00564 Cme11g01024
Vvi3g317 . . . . . . . . Cmo19g00837 Cmo11g01805 . . . . Sed04g3767 Cpe04g00648 Cpe15g00660 Bhi05g01539 Tan02g0537 Cmetu01g0894 Lac12g0434 Hepe02g0342 . . Cla02g00324 Cam02g0332 Cec02g0332 Cco02g0336 Clacu02g0322 Cmu02g0321 Cre02g0654 . . . . . Csa07g00220 . . Blo04g00615 . . . Bpe15g00770 . Bma03g00651 Bma08g00705 . . . Cma11g01316 Cma19g00820 Car11g01432 Car19g00637 . . . . . . . . . . . . . . . . Lsi11g01314 . Chy01g00562 .
Vvi3g318 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g319 . . . . . . . . Cmo19g00838 Cmo11g01806 . . . . Sed01g0791 . . Bhi05g01538 Tan02g0536 Cmetu02g1725 . Hepe02g0341 . . . . . . . . . . . . . . Csa07g00221 . . . . . . . . . . . . . Cma11g01315 Cma19g00822 . Car19g00638 . . . . . . . . . . . . . . . . . . Chy01g00559 .
Vvi3g320 . . . . . . . . . . . Cma20g00708 . Car20g00607 . . . . . . . . . . Cla02g00322 Cam02g0331 Cec02g0331 Cco02g0335 Clacu02g0321 Cmu02g0320 Cre02g0653 . . Cone3ag1258 . . . . . . . . . . . . . . . Cmo20g00702 . . Car11g01433 . Cpe16g00358 . . . . . . . . Cla02g01052 Cam02g1123 Cec02g1127 Cco02g1163 Clacu02g1110 Cmu02g1074 Cre02g1378 Lsi11g01315 . . Cme11g01021
Vvi3g321 . . . . . . . . Cmo19g00842 Cmo11g01827 . . . . . Cpe04g00668 Cpe15g00663 Bhi05g01535 . . . . . . Cla02g00321 . . . . . . Cone12ag1284 Cone8ag1348 . . . Csa07g00223 . . . Blo13g00458 . . Bpe15g00769 . Bma03g00652 Bma08g00704 . . . Cma11g01293 Cma19g00825 Car11g01453 Car19g00640 . . . . . . . . . . . . . . . . Lsi11g01317 . Chy01g00557 .
Vvi3g322 . . . . . . . . Cmo19g00843 . . . . . Sed05g2133 . Cpe15g00664 Bhi05g01534 Tan02g0531 Cmetu11g0650 Lac12g0430 Hepe02g0338 . . Cla02g00320 Cam02g0328 Cec02g0328 Cco02g0332 Clacu02g0318 Cmu02g0317 Cre02g0650 . . Cone3ag1260 Cone10ag1198 . Csa07g00224 . . . . . . . . . . . . . . Cma19g00826 . Car19g00641 . . . . . . . . . Cla02g01049 Cam02g1120 Cec02g1125 Cco02g1158 Clacu02g1106 Cmu02g1066 Cre02g1374 Lsi11g01318 . Chy01g00556 .
Vvi3g323 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1261 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g324 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g325 . Blo15g00407 Bda06g00455 . Bpe07g00688 Bpe12g00162 . Bma12g00892 Cmo19g00847 . Cma02g00309 . Car02g00191 . . . Cpe15g00667 Bhi05g01524 . . . . . . Cla02g00317 . . . . . . Cone12ag1283 Cone8ag1349 Cone3ag1262 . . Csa07g00227 . . . Blo13g00457 . . . . . Bma08g00703 . Cmo02g00304 . . Cma19g00829 . Car19g00644 Cpe16g00373 Cpe05g01329 . . . . . . . Cla02g01047 . Cec02g1120 Cco02g1154 Clacu02g1101 Cmu02g1061 Cre02g1369 Lsi11g01320 . Chy01g00553 Cme11g01018
   
Previous Page 270 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
6 6554173 6556300 + Bda023696.1 Bda06g00452 452
6 6582510 6590906 - Bda023699.1 Bda06g00455 455
5 51823751 51835202 + XM_039031917.1 Bhi05g01524 1524
5 51953833 51955602 + XM_039031630.1 Bhi05g01534 1534
5 51956076 51958881 - XM_039031629.1 Bhi05g01535 1535
5 51971499 51976718 - XM_039031863.1 Bhi05g01538 1538
5 51980676 51986091 - XM_039032648.1 Bhi05g01539 1539
5 52007864 52012721 - XM_039032999.1 Bhi05g01540 1540
4 5339627 5342133 + BLOR13526 Blo04g00614 614
4 5344468 5348513 + BLOR13527 Blo04g00615 615
13 24991902 25001967 + BLOR05738 Blo13g00457 457
13 25002960 25005479 - BLOR05739 Blo13g00458 458
13 25138580 25140808 - BLOR05741 Blo13g00460 460
15 5827738 5836395 + BLOR06801 Blo15g00407 407
15 5876627 5878798 - BLOR06805 Blo15g00411 411
3 5339502 5341828 + Bma016943.1 Bma03g00650 650
3 5342493 5345624 + Bma016944.1 Bma03g00651 651
3 5351378 5353721 + Bma016946.1 Bma03g00652 652
8 42687325 42695280 + Bma028065.2 Bma08g00703 703
8 42721753 42724367 - Bma028066.1 Bma08g00704 704
8 42731414 42735227 - Bma028067.1 Bma08g00705 705
8 42788626 42790796 - Bma028070.1 Bma08g00708 708
12 40175731 40177911 + Bma008216.1 Bma12g00889 889
12 40248529 40257259 - Bma008220.1 Bma12g00892 892
7 13504495 13506808 + Bpe021533.1 Bpe07g00685 685
7 13517015 13525239 - Bpe021536.1 Bpe07g00688 688
12 1210384 1219148 - Bpe005399.3 Bpe12g00162 162
15 18028756 18031088 - Bpe001698.1 Bpe15g00769 769
15 18035865 18039751 - Bpe001699.3 Bpe15g00770 770
15 18040714 18042896 - Bpe024578 Bpe15g00771 771
2 4031035 4032021 + CaPI482276_02g003280.1 Cam02g0328 328
2 4048770 4051982 - CaPI482276_02g003310.1 Cam02g0331 331
2 4055510 4061116 - CaPI482276_02g003320.1 Cam02g0332 332
2 4078887 4085052 - CaPI482276_02g003340.1 Cam02g0334 334
2 20942808 20943179 + CaPI482276_02g011200.1 Cam02g1120 1120
2 21014384 21018531 + CaPI482276_02g011230.1 Cam02g1123 1123
2 21039264 21041237 - CaPI482276_02g011250.1 Cam02g1125 1125
2 1123384 1125367 + Carg19775-RA Car02g00186 186
2 1138326 1147761 - Carg19780-RA Car02g00191 191
11 11662928 11665832 + Carg18099-RA Car11g01431 1431
11 11667161 11671497 + Carg18098-RA Car11g01432 1432
11 11672743 11677559 + Carg18097-RA Car11g01433 1433
11 11777866 11780736 - Carg18078-RA Car11g01453 1453
19 7728185 7730787 + Carg04117-RA Car19g00636 636
19 7732972 7738622 + Carg04118-RA Car19g00637 637
19 7740014 7744213 + Carg04119-RA Car19g00638 638
19 7748770 7751802 + Carg04121-RA Car19g00640 640
19 7752592 7753578 - Carg04122-RA Car19g00641 641
19 7764953 7776692 - Carg04125-RA Car19g00644 644
20 3408109 3411724 + Carg16127-RA Car20g00607 607
20 3413620 3416271 - Carg16128-RA Car20g00608 608
2 3025623 3026609 + CcPI632755_02g003320.1 Cco02g0332 332
2 3042596 3046823 - CcPI632755_02g003350.1 Cco02g0335 335
2 3050358 3055961 - CcPI632755_02g003360.1 Cco02g0336 336
2 3073122 3079155 - CcPI632755_02g003380.1 Cco02g0338 338
2 19883135 19897437 - CcPI632755_02g011540.1 Cco02g1154 1154
2 20196334 20196720 + CcPI632755_02g011580.1 Cco02g1158 1158
2 20296741 20300132 + CcPI632755_02g011630.1 Cco02g1163 1163
2 20326444 20328418 - CcPI632755_02g011670.1 Cco02g1167 1167
2 3027246 3028232 + CePI673135_02g003280.1 Cec02g0328 328
2 3047481 3050668 - CePI673135_02g003310.1 Cec02g0331 331
2 3054121 3059764 - CePI673135_02g003320.1 Cec02g0332 332
2 3077598 3083708 - CePI673135_02g003340.1 Cec02g0334 334
2 24727069 24740717 - CePI673135_02g011200.1 Cec02g1120 1120
2 24916518 24917386 + CePI673135_02g011250.1 Cec02g1125 1125
2 24961934 24965805 + CePI673135_02g011270.1 Cec02g1127 1127
2 24993408 24995382 - CePI673135_02g011280.1 Cec02g1128 1128
1 3963768 3975020 + Chy1G005530.1 Chy01g00553 553
1 3990049 3991035 + Chy1G005560.1 Chy01g00556 556
1 3992404 3994769 - Chy1G005570.1 Chy01g00557 557
1 4008984 4012204 - Chy1G005590.1 Chy01g00559 559
1 4023026 4026190 - Chy1G005620.1 Chy01g00562 562
1 4038433 4042166 - Chy1G005640.1 Chy01g00564 564
2 2908280 2909266 + ClG42_02g0031800.10 Clacu02g0318 318
2 2925490 2928701 - ClG42_02g0032100.10 Clacu02g0321 321
2 2932198 2937829 - ClG42_02g0032200.10 Clacu02g0322 322
2 2955474 2960679 - ClG42_02g0032400.10 Clacu02g0324 324
2 20704663 20718399 - ClG42_02g0110100.10 Clacu02g1101 1101
2 20897640 20898107 + ClG42_02g0110600.10 Clacu02g1106 1106
2 20966917 20971071 + ClG42_02g0111000.10 Clacu02g1110 1110
2 20991094 20993065 - ClG42_02g0111300.10 Clacu02g1113 1113
2 3073844 3088234 + ClCG02G003140.2 Cla02g00317 317
2 3108165 3113168 + ClCG02G003170.2 Cla02g00320 320
2 3113172 3115520 - ClCG02G003180.1 Cla02g00321 321
2 3124389 3132759 - ClCG02G003190.1 Cla02g00322 322
2 3135551 3141182 - ClCG02G003200.2 Cla02g00324 324
2 3159048 3166398 - ClCG02G003220.1 Cla02g00326 326
2 21465560 21483046 - ClCG02G010700.1 Cla02g01047 1047
2 21667149 21668025 + ClCG02G010730.1 Cla02g01049 1049
2 21735913 21740540 + ClCG02G010760.1 Cla02g01052 1052
2 21760636 21762667 - ClCG02G010770.1 Cla02g01053 1053
2 1450908 1453528 + CmaCh02G003070.1 Cma02g00307 307
2 1464696 1475501 - CmaCh02G003090.1 Cma02g00309 309
11 8634877 8638172 + CmaCh11G012930.1 Cma11g01293 1293
11 8739741 8742336 - CmaCh11G013150.1 Cma11g01315 1315
11 8742471 8748196 - CmaCh11G013160.1 Cma11g01316 1316
19 7836726 7839211 + CmaCh19G008190.1 Cma19g00819 819
19 7841092 7846860 + CmaCh19G008200.1 Cma19g00820 820
19 7848454 7851407 + CmaCh19G008220.1 Cma19g00822 822
19 7857276 7860304 + CmaCh19G008250.1 Cma19g00825 825
19 7861147 7862100 - CmaCh19G008260.1 Cma19g00826 826
19 7872965 7885011 - CmaCh19G008290.1 Cma19g00829 829
20 3264879 3268371 + CmaCh20G007080.1 Cma20g00708 708
20 3271028 3273686 - CmaCh20G007090.1 Cma20g00709 709
11 14646603 14661142 + MELO3C013476.2.1 Cme11g01018 1018
11 14709199 14712255 + MELO3C013479.2.1 Cme11g01021 1021
11 14722094 14724419 - MELO3C013480.2.1 Cme11g01024 1024
1 4336062 4340703 - PI0025267.1 Cmetu01g0007 7
1 4317004 4322386 - PI0026036.1 Cmetu01g0894 894
2 3482051 3488792 + PI0027294.1 Cmetu02g1725 1725
11 17856441 17857272 - PI0023051.1 Cmetu11g0650 650
2 1515604 1517985 + CmoCh02G003020.1 Cmo02g00302 302
2 1529636 1541080 - CmoCh02G003040.1 Cmo02g00304 304
11 12660556 12663270 + CmoCh11G018040.1 Cmo11g01804 1804
11 12664594 12669255 + CmoCh11G018050.1 Cmo11g01805 1805
11 12670409 12674588 + CmoCh11G018060.1 Cmo11g01806 1806
11 12781870 12784607 - CmoCh11G018270.1 Cmo11g01827 1827
19 8177898 8193220 + CmoCh19G008360.1 Cmo19g00836 836
19 8195376 8202194 + CmoCh19G008370.1 Cmo19g00837 837
19 8202638 8205592 + CmoCh19G008380.1 Cmo19g00838 838
19 8211605 8213908 + CmoCh19G008420.1 Cmo19g00842 842
19 8215102 8216088 - CmoCh19G008430.1 Cmo19g00843 843
19 8226861 8238378 - CmoCh19G008470.1 Cmo19g00847 847
20 3464698 3468222 + CmoCh20G007020.1 Cmo20g00702 702
20 3470704 3472954 - CmoCh20G007030.1 Cmo20g00703 703
2 2902167 2903153 + CmPI595203_02g003170.1 Cmu02g0317 317
2 2919327 2922538 - CmPI595203_02g003200.1 Cmu02g0320 320
2 2926044 2931675 - CmPI595203_02g003210.1 Cmu02g0321 321
2 2949323 2954535 - CmPI595203_02g003230.1 Cmu02g0323 323
2 20577061 20590763 - CmPI595203_02g010610.1 Cmu02g1061 1061
2 20770119 20770586 + CmPI595203_02g010660.1 Cmu02g1066 1066
2 20839407 20843561 + CmPI595203_02g010740.1 Cmu02g1074 1074
2 20863578 20865549 - CmPI595203_02g010760.1 Cmu02g1076 1076
3 31410989 31414144 + Conep03aG0176500.1 Cone3ag1258 1258
3 31426383 31428274 - Conep03aG0176700.1 Cone3ag1260 1260
3 31428657 31429652 + Conep03aG0176800.1 Cone3ag1261 1261
3 31437606 31445827 - Conep03aG0176900.1 Cone3ag1262 1262
8 10814894 10817279 + Conep08aG0138500.1 Cone8ag1346 1346
8 10823275 10825447 + Conep08aG0138700.1 Cone8ag1348 1348
8 10827919 10832896 - Conep08aG0138800.1 Cone8ag1349 1349
10 8845267 8845722 + Conep10aG0123300.1 Cone10ag1198 1198
12 9795258 9800400 + Conep12aG0132400.1 Cone12ag1283 1283
12 9803573 9806026 - Conep12aG0132500.1 Cone12ag1284 1284
4 6631391 6634122 + Cp4.1LG04g04460.1 Cpe04g00647 647
4 6635523 6642468 + Cp4.1LG04g04420.1 Cpe04g00648 648
4 6758315 6761046 - Cp4.1LG04g04210.1 Cpe04g00668 668
5 9339804 9351985 + Cp4.1LG05g13240.1 Cpe05g01329 1329
5 9363481 9365897 - Cp4.1LG05g13420.1 Cpe05g01332 1332
15 7254959 7257940 + Cp4.1LG15g06500.1 Cpe15g00659 659
15 7260086 7265596 + Cp4.1LG15g06530.1 Cpe15g00660 660
15 7275759 7278635 + Cp4.1LG15g06680.1 Cpe15g00663 663
15 7279827 7280813 - Cp4.1LG15g06740.1 Cpe15g00664 664
15 7292808 7306004 - Cp4.1LG15g06710.1 Cpe15g00667 667
16 5294936 5297283 + Cp4.1LG16g03500.1 Cpe16g00357 357
16 5299457 5303383 - Cp4.1LG16g03580.1 Cpe16g00358 358
16 5385784 5397471 + Cp4.1LG16g03650.1 Cpe16g00373 373
2 3445153 3446440 + CrPI670011_02g006500.1 Cre02g0650 650
2 3462888 3466095 - CrPI670011_02g006530.1 Cre02g0653 653
2 3469671 3475223 - CrPI670011_02g006540.1 Cre02g0654 654
2 3493284 3498409 - CrPI670011_02g006560.1 Cre02g0656 656
2 21989427 22003629 - CrPI670011_02g013690.1 Cre02g1369 1369
2 22303123 22304112 + CrPI670011_02g013740.1 Cre02g1374 1374
2 22389221 22393040 + CrPI670011_02g013780.1 Cre02g1378 1378
2 22416943 22418917 - CrPI670011_02g013800.1 Cre02g1380 1380
7 1724695 1728359 + CsaV3_7G002170.1 Csa07g00217 217
7 1747485 1752243 + CsaV3_7G002200.1 Csa07g00220 220
7 1754310 1760052 + CsaV3_7G002210.1 Csa07g00221 221
7 1769829 1773593 + CsaV3_7G002230.1 Csa07g00223 223
7 1770382 1775615 - CsaV3_7G002240.1 Csa07g00224 224
7 1788691 1799558 - CsaV3_7G002270.1 Csa07g00227 227
2 3215483 3217269 + Hsped.02g03380.1 Hepe02g0338 338
2 3228944 3233720 - Hsped.02g03410.1 Hepe02g0341 341
2 3236192 3240411 - Hsped.02g03420.1 Hepe02g0342 342
2 3247035 3248195 - Hsped.02g03440.1 Hepe02g0344 344
12 4764944 4765930 + Lag0014802.1 Lac12g0430 430
12 4811619 4817064 - Lag0014806.1 Lac12g0434 434
12 4842062 4845726 - Lag0014808.1 Lac12g0436 436
11 21748833 21760062 + Lsi11G013120.1 Lsi11g01312 1312
11 21776026 21781687 + Lsi11G013140.1 Lsi11g01314 1314
11 21784771 21790063 + Lsi11G013150.1 Lsi11g01315 1315
11 21799520 21803058 + Lsi11G013170.1 Lsi11g01317 1317
11 21803671 21804624 - Lsi11G013180.1 Lsi11g01318 1318
11 21818657 21831985 - Lsi11G013200.1 Lsi11g01320 1320
1 5847418 5852287 - Sed0007023.5 Sed01g0791 791
4 46310723 46314955 - Sed0017196.1 Sed04g3767 3767
5 34341699 34343401 + Sed0026152.1 Sed05g2133 2133
8 33278776 33282950 - Sed0016236.1 Sed08g1873 1873
2 4760193 4763026 + Tan0015309.1 Tan02g0531 531
2 4780499 4783573 - Tan0017918.1 Tan02g0536 536
2 4790742 4795043 - Tan0002574.1 Tan02g0537 537
2 4809163 4815070 - Tan0015180.1 Tan02g0539 539
3 2970315 2972915 + Vvi3g316 Vvi3g316 316
3 2985908 2990105 + Vvi3g317 Vvi3g317 317
3 2992543 2996671 + Vvi3g318 Vvi3g318 318
3 3000468 3006751 + Vvi3g319 Vvi3g319 319
3 3008796 3024629 - Vvi3g320 Vvi3g320 320
3 3025508 3027713 + Vvi3g321 Vvi3g321 321
3 3030638 3032099 - Vvi3g322 Vvi3g322 322
3 3032233 3033376 + Vvi3g323 Vvi3g323 323
3 3033389 3037328 + Vvi3g324 Vvi3g324 324
3 3038680 3049098 - Vvi3g325 Vvi3g325 325
       

DecoBrowse