Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1251 . . . . . Bpe10g00767 . Bma15g00254 . Cmo18g00682 . Cma18g00695 . Car18g00645 . . . . . . . . . . . . . . . . . . . . . . . . . Blo06g00813 . . . . . . . . . . . . . . . . . . . . . . . Cla11g01338 Cam11g1396 Cec11g1418 Cco11g1415 . . Cre11g1794 . . . .
Vvi1g1252 . . . . . Bpe10g00765 . Bma15g00257 . . . Cma18g00693 . Car18g00643 Sed06g0154 Cpe09g00592 . Bhi07g01929 Tan04g0043 Cmetu10g1733 Lac13g0049 Hepe10g1512 . . . . . . . . . . . . . Lsi04g00686 . . Cme10g00666 Blo06g00812 . . . . . . . . . . . . . . . . . . . . . . . Cla11g01335 Cam11g1393 Cec11g1415 Cco11g1411 Clacu11g1551 Cmu11g1372 Cre11g1790 . . . .
Vvi1g1253 . . Bda01g02177 . . . . . Cmo04g01936 . . Cma18g00692 . Car18g00641 Sed04g0293 Cpe09g00593 Cpe01g01619 Bhi07g01930 Tan04g0042 Cmetu10g0783 Lac13g0048 Hepe10g1511 . . . . . . . . . . . . . . . . Cme10g00667 . . . . . . Bma01g00007 . . . . Cma04g01839 . . . . . . . . . . . . Cla11g01333 Cam11g1392 Cec11g1414 Cco11g1410 Clacu11g1550 Cmu11g1371 Cre11g1789 . . . .
Vvi1g1254 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1255 . . . . . . . . Cmo04g01937 . . Cma18g00691 . . Sed06g1755 Cpe09g00594 Cpe01g01620 Bhi07g01931 Tan04g0041 Cmetu10g1152 Lac13g0047 Hepe10g1510 . . . . . . . . . . . . . Lsi04g00687 . . Cme10g00670 Blo06g00811 . . . . . . . . . . Cma04g01840 . . . . . . . . . . . . Cla11g01332 Cam11g1391 Cec11g1413 Cco11g1409 Clacu11g1549 Cmu11g1370 Cre11g1788 . . . .
Vvi1g1256 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1257 . . . . . Bpe10g00764 . Bma15g00258 Cmo04g01938 . . Cma18g00689 . Car18g00639 Sed01g1192 Cpe09g00596 Cpe01g01622 Bhi07g01933 Tan04g0039 Cmetu04g2908 Lac13g0044 Hepe10g1508 . . . . . . . . . . . . . Lsi04g00689 . . Cme10g00672 . . . . . . . . . . . Cma04g01842 . Car04g01847 . . . . . . . . . . Cla11g01331 Cam11g1390 Cec11g1412 Cco11g1408 Clacu11g1548 Cmu11g1369 Cre11g1787 . . . .
Vvi1g1258 . . . . . Bpe10g00763 . Bma15g00259 Cmo04g01939 . . Cma18g00688 . Car18g00638 . Cpe09g00597 Cpe01g01623 . . . . . . . . . . . . . . . . . . . . . . Blo06g00809 . . . . . . . . . . Cma04g01843 . Car04g01848 . . Cpe03g01229 . . . . . . . . . . . . . . . . . .
Vvi1g1259 . . . . . Bpe10g00762 . Bma15g00260 . Cmo18g00635 . Cma18g00686 . Car18g00637 Sed06g1758 Cpe09g00598 . Bhi07g01934 Tan04g0037 Cmetu10g1318 Lac13g0042 Hepe10g1506 . . . . . . . . . . . . . Lsi04g00690 . . Cme10g00674 . . . . . . . . . . . . . . . . . . . . . . . . Cla11g01330 Cam11g1389 Cec11g1410 Cco11g1407 Clacu11g1547 Cmu11g1368 Cre11g1786 . . . .
Vvi1g1260 Blo01g00179 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo12g00276 . . . . . . . . . . . . . Cpe17g01076 . Bhi12g02463 . . . . . . . . . . . . . . . . .
   
Previous Page 126 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
1 57770016 57788314 - Bda004520.2 Bda01g02177 2177
7 51642771 51645240 - XM_039035436.1 Bhi07g01929 1929
7 51648014 51659788 + XM_039035415.1 Bhi07g01930 1930
7 51660580 51661875 - XM_039035414.1 Bhi07g01931 1931
7 51761380 51765641 + XM_039037149.1 Bhi07g01933 1933
7 51768031 51771046 - XM_039037146.1 Bhi07g01934 1934
12 77517300 77521466 - XM_039051215.1 Bhi12g02463 2463
1 2437516 2438733 - BLOR00179 Blo01g00179 179
6 31350550 31358338 + BLOR17392 Blo06g00809 809
6 31368183 31369064 + BLOR17394 Blo06g00811 811
6 31370476 31375162 + BLOR17395 Blo06g00812 812
6 31385515 31386849 + BLOR17396 Blo06g00813 813
12 16557595 16562106 + BLOR04295 Blo12g00276 276
1 231797 245324 - Bma000178.1 Bma01g00007 7
15 2527075 2528412 - Bma013239.1 Bma15g00254 254
15 2541084 2544901 - Bma030773 Bma15g00257 257
15 2551973 2555556 + Bma013241.1 Bma15g00258 258
15 2557475 2559883 - Bma013242.3 Bma15g00259 259
15 2567570 2569609 - Bma030774 Bma15g00260 260
10 13875466 13877505 + Bpe003068.1 Bpe10g00762 762
10 13880213 13882679 + Bpe003069.1 Bpe10g00763 763
10 13884581 13887998 - Bpe003070.2 Bpe10g00764 764
10 13892655 13900278 + Bpe024712 Bpe10g00765 765
10 13909362 13910699 + Bpe003072.1 Bpe10g00767 767
11 26559920 26562184 + CaPI482276_11g013890.1 Cam11g1389 1389
11 26567124 26575577 - CaPI482276_11g013900.1 Cam11g1390 1390
11 26586696 26587550 + CaPI482276_11g013910.1 Cam11g1391 1391
11 26589060 26595724 - CaPI482276_11g013920.1 Cam11g1392 1392
11 26597342 26599857 + CaPI482276_11g013930.1 Cam11g1393 1393
11 26632937 26634326 + CaPI482276_11g013960.1 Cam11g1396 1396
4 10691591 10696235 + Carg24399-RA Car04g01847 1847
4 10698013 10702156 - Carg24400-RA Car04g01848 1848
18 7678813 7681426 + Carg21220-RA Car18g00637 637
18 7684010 7688482 + Carg21221-RA Car18g00638 638
18 7690426 7694654 - Carg21222-RA Car18g00639 639
18 7701152 7708822 - Carg21224-RA Car18g00641 641
18 7710018 7712610 + Carg21226-RA Car18g00643 643
18 7728719 7730227 + Carg21228-RA Car18g00645 645
11 26838992 26841269 + CcPI632755_11g014070.1 Cco11g1407 1407
11 26846698 26854597 - CcPI632755_11g014080.1 Cco11g1408 1408
11 26866278 26867132 + CcPI632755_11g014090.1 Cco11g1409 1409
11 26868650 26875293 - CcPI632755_11g014100.1 Cco11g1410 1410
11 26876949 26879503 + CcPI632755_11g014110.1 Cco11g1411 1411
11 26915233 26916618 + CcPI632755_11g014150.1 Cco11g1415 1415
11 28310849 28313126 + CePI673135_11g014100.1 Cec11g1410 1410
11 28325867 28326588 - CePI673135_11g014120.1 Cec11g1412 1412
11 28337617 28338471 + CePI673135_11g014130.1 Cec11g1413 1413
11 28339973 28346635 - CePI673135_11g014140.1 Cec11g1414 1414
11 28348308 28351116 + CePI673135_11g014150.1 Cec11g1415 1415
11 28385257 28386643 + CePI673135_11g014180.1 Cec11g1418 1418
11 26579742 26582026 + ClG42_11g0154700.10 Clacu11g1547 1547
11 26587286 26595257 - ClG42_11g0154800.10 Clacu11g1548 1548
11 26606427 26607281 + ClG42_11g0154900.10 Clacu11g1549 1549
11 26608792 26615429 - ClG42_11g0155000.10 Clacu11g1550 1550
11 26617051 26619607 + ClG42_11g0155100.10 Clacu11g1551 1551
11 26773143 26776451 + ClCG11G013580.2 Cla11g01330 1330
11 26781192 26789969 - ClCG11G013590.2 Cla11g01331 1331
11 26801126 26801980 + ClCG11G013610.1 Cla11g01332 1332
11 26803369 26810234 - ClCG11G013620.2 Cla11g01333 1333
11 26815208 26815759 + ClCG11G013640.1 Cla11g01335 1335
11 26850430 26852140 + ClCG11G013670.1 Cla11g01338 1338
4 9269919 9275075 + CmaCh04G018390.1 Cma04g01839 1839
4 9275754 9276608 - CmaCh04G018400.1 Cma04g01840 1840
4 9281138 9286315 + CmaCh04G018420.1 Cma04g01842 1842
4 9287443 9290328 - CmaCh04G018430.1 Cma04g01843 1843
18 6317824 6320501 + CmaCh18G006860.1 Cma18g00686 686
18 6324373 6326915 + CmaCh18G006880.1 Cma18g00688 688
18 6327746 6333094 - CmaCh18G006890.1 Cma18g00689 689
18 6339233 6340087 + CmaCh18G006910.1 Cma18g00691 691
18 6340402 6346180 - CmaCh18G006920.1 Cma18g00692 692
18 6346933 6349793 + CmaCh18G006930.1 Cma18g00693 693
18 6365647 6367136 + CmaCh18G006950.1 Cma18g00695 695
10 4248413 4250734 - MELO3C011863.2.1 Cme10g00666 666
10 4252144 4259713 + MELO3C011862.2.1 Cme10g00667 667
10 4260562 4261787 - MELO3C011861.2.1 Cme10g00670 670
10 4274520 4278478 + MELO3C011859.2.1 Cme10g00672 672
10 4281476 4284298 - MELO3C011858.2.1 Cme10g00674 674
4 8370744 8375217 - PI0011962.1 Cmetu04g2908 2908
10 17661269 17671120 - PI0017928.2 Cmetu10g0783 783
10 17661883 17662737 + PI0005191.1 Cmetu10g1152 1152
10 17639743 17642519 + PI0026813.1 Cmetu10g1318 1318
10 17672446 17674744 + PI0003610.1 Cmetu10g1733 1733
4 9877211 9882241 + CmoCh04G019360.1 Cmo04g01936 1936
4 9883035 9883889 - CmoCh04G019370.1 Cmo04g01937 1937
4 9885526 9893373 + CmoCh04G019380.1 Cmo04g01938 1938
4 9894489 9896934 - CmoCh04G019390.1 Cmo04g01939 1939
18 8064232 8066630 - CmoCh18G006350.1 Cmo18g00635 635
18 8741653 8743658 + CmoCh18G006820.1 Cmo18g00682 682
11 25831942 25834226 + CmPI595203_11g013680.1 Cmu11g1368 1368
11 25839434 25847414 - CmPI595203_11g013690.1 Cmu11g1369 1369
11 25858581 25859435 + CmPI595203_11g013700.1 Cmu11g1370 1370
11 25860946 25867583 - CmPI595203_11g013710.1 Cmu11g1371 1371
11 25869205 25871755 + CmPI595203_11g013720.1 Cmu11g1372 1372
1 9898554 9905823 + Cp4.1LG01g16120.1 Cpe01g01619 1619
1 9904629 9905483 - Cp4.1LG01g16160.1 Cpe01g01620 1620
1 9909388 9914227 + Cp4.1LG01g16140.1 Cpe01g01622 1622
1 9915394 9920024 - Cp4.1LG01g16210.1 Cpe01g01623 1623
3 9972981 9986031 + Cp4.1LG03g12950.1 Cpe03g01229 1229
9 4109040 4112921 - Cp4.1LG09g05860.1 Cpe09g00592 592
9 4114400 4123721 + Cp4.1LG09g05890.1 Cpe09g00593 593
9 4122799 4123653 - Cp4.1LG09g05810.1 Cpe09g00594 594
9 4131533 4135924 + Cp4.1LG09g05900.1 Cpe09g00596 596
9 4138283 4142716 - Cp4.1LG09g05830.1 Cpe09g00597 597
9 4145298 4149751 - Cp4.1LG09g05870.1 Cpe09g00598 598
17 8173692 8178685 - Cp4.1LG17g10810.1 Cpe17g01076 1076
11 29452450 29454723 + CrPI670011_11g017860.1 Cre11g1786 1786
11 29460529 29468430 - CrPI670011_11g017870.1 Cre11g1787 1787
11 29482502 29483356 + CrPI670011_11g017880.1 Cre11g1788 1788
11 29484824 29491396 - CrPI670011_11g017890.1 Cre11g1789 1789
11 29491442 29495870 + CrPI670011_11g017900.1 Cre11g1790 1790
11 29530864 29532255 + CrPI670011_11g017940.1 Cre11g1794 1794
10 51833254 51835512 + Hsped.10g15060.1 Hepe10g1506 1506
10 51844488 51848904 - Hsped.10g15080.1 Hepe10g1508 1508
10 51865999 51867650 + Hsped.10g15100.1 Hepe10g1510 1510
10 51873006 51874813 - Hsped.10g15110.1 Hepe10g1511 1511
10 51876413 51878737 + Hsped.10g15120.1 Hepe10g1512 1512
13 318236 320505 + Lag0039838.1 Lac13g0042 42
13 329914 333539 - Lag0039840.1 Lac13g0044 44
13 342215 343069 + Lag0039843.1 Lac13g0047 47
13 344281 351081 - Lag0039844.1 Lac13g0048 48
13 352196 354696 + Lag0039845.1 Lac13g0049 49
4 6276437 6278269 - Lsi04G006860.1 Lsi04g00686 686
4 6287464 6288318 - Lsi04G006870.1 Lsi04g00687 687
4 6312967 6321897 + Lsi04G006890.1 Lsi04g00689 689
4 6335274 6339383 - Lsi04G006900.1 Lsi04g00690 690
1 8872501 8877494 + Sed0021639.4 Sed01g1192 1192
4 2176788 2183657 - Sed0020663.1 Sed04g0293 293
6 1073191 1076061 - Sed0000233.2 Sed06g0154 154
6 42299596 42300762 - Sed0024152.1 Sed06g1755 1755
6 42324381 42327155 - Sed0021168.1 Sed06g1758 1758
4 356144 358836 + Tan0009667.2 Tan04g0037 37
4 368571 372447 - Tan0010246.1 Tan04g0039 39
4 393449 394867 + Tan0016280.1 Tan04g0041 41
4 395438 401957 - Tan0002880.1 Tan04g0042 42
4 403629 406118 + Tan0022266.1 Tan04g0043 43
1 20997838 21002039 + Vvi1g1251 Vvi1g1251 1251
1 21006607 21012278 - Vvi1g1252 Vvi1g1252 1252
1 21012645 21026739 + Vvi1g1253 Vvi1g1253 1253
1 21029843 21031391 + Vvi1g1254 Vvi1g1254 1254
1 21033813 21034911 - Vvi1g1255 Vvi1g1255 1255
1 21046882 21052994 - Vvi1g1256 Vvi1g1256 1256
1 21055708 21063369 + Vvi1g1257 Vvi1g1257 1257
1 21064304 21071687 - Vvi1g1258 Vvi1g1258 1258
1 21076451 21078724 - Vvi1g1259 Vvi1g1259 1259
1 21087966 21096140 + Vvi1g1260 Vvi1g1260 1260
       

DecoBrowse