Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g574 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g575 . . Bda07g00378 Bda09g00408 Bpe09g00151 Bpe08g01113 . Bma13g01085 . Cmo06g00891 . . . . . . . . . . . . . . Cla10g00472 Cam10g0460 Cec10g0481 Cco10g0469 Clacu10g0479 Cmu10g1308 Cre10g0713 . Cone9ag0051 Cone14ag1180 Cone15ag1195 . Csa03g00474 . Cme06g02836 Blo07g00883 . . . . . Bma07g01285 Bma14g00324 Sed08g2977 . . . . . . . . Bhi11g00574 Tan01g1748 Cmetu06g2464 . . . . . . . . . . . Lsi05g00562 . . .
Vvi19g576 . Blo03g01459 . . . . . Bma13g01091 Cmo16g00948 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00849 . Bda12g00935 . . . . . . . . Cma16g00913 . Car16g00886 Cpe14g00738 . . . . . . . . . . . . . . . . . Chy06g01848 .
Vvi19g577 . . . . Bpe09g00150 . Bma10g00579 Bma13g01092 Cmo16g00949 Cmo06g00890 . . . . . . . . . . . . . . Cla10g00471 Cam10g0459 Cec10g0480 Cco10g0468 Clacu10g0478 Cmu10g1307 Cre10g0712 . . Cone14ag1181 Cone15ag1198 . Csa03g00473 . Cme06g02835 Blo07g00882 Blo10g00850 Bda05g00695 Bda12g00936 . Bpe03g00771 . . Sed08g2974 . . . Cma16g00914 . Car16g00887 Cpe14g00739 . Bhi11g00573 Tan01g1750 Cmetu06g1656 . . . . . . . . . . . Lsi05g00561 . Chy06g01849 .
Vvi19g578 Blo03g00540 . Bda07g00379 . . . . . . . Cma01g01114 Cma09g00971 Car01g00983 Car09g00885 Sed04g3702 Cpe06g00785 Cpe02g00790 Bhi09g01696 Tan01g3124 Cmetu01g0770 . Hepe01g1248 Mch11g1217 . . . . . . . . Cone6ag0043 Cone9ag0050 . . Lsi02g01880 . . . . . . . . . . Bma14g00322 . Cmo01g01159 Cmo09g00971 . . . . . . . . . . . . . Cla09g01034 Cam09g1089 Cec09g1088 Cco09g1109 . . Cre09g1054 . . Chy01g01056 Cme01g00997
Vvi19g579 . . . . Bpe09g00149 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma16g00915 . Car16g00888 Cpe14g00740 . . . . . . . . . . . . . . . . . . .
Vvi19g580 . . . . . . . . Cmo16g00950 . . . . . . . . . . . . . . . Cla10g00470 Cam10g0457 Cec10g0479 Cco10g0466 Clacu10g0477 Cmu10g1306 Cre10g0711 . . Cone14ag1182 Cone15ag1199 . Csa03g00472 . Cme06g02834 . Blo10g00851 . Bda12g00937 . . . . Sed08g2972 . . . . . . . . Bhi11g00572 Tan01g1753 Cmetu06g0787 . Hepe06g0022 Mch10g1340 . . . . . . . . Lsi05g00560 . Chy06g01850 .
Vvi19g581 . . . . . Bpe08g01111 . . . . Cma01g01113 Cma09g00973 Car01g00982 Car09g00886 Sed04g3698 Cpe06g00786 . Bhi09g01698 Tan01g3126 Cmetu01g0909 . Hepe01g1247 Mch11g1218 . . . . . . . . . Cone9ag0049 . . Lsi02g01879 . . . . . . . . . Bma07g01283 . . Cmo01g01158 Cmo09g00972 . . . . . . . . . . . . . . . . . . . . . . Chy01g01057 Cme01g00996
Vvi19g582 Blo03g00539 Blo03g01461 Bda07g00380 Bda09g00410 . Bpe08g01110 . . . . . Cma09g00974 Car01g00981 Car09g00888 Sed07g2701 . Cpe02g00791 Bhi09g01699 Tan01g3130 Cmetu10g1344 . Hepe01g1246 Mch11g1219 . . . . . . . . Cone6ag0042 Cone9ag0048 . . Lsi02g01878 Csa07g01012 . . . . . . . . Bma07g01282 Bma14g00321 . Cmo01g01157 Cmo09g00973 . . . . . . . . . . . . . Cla09g01035 Cam09g1091 Cec09g1090 Cco09g1111 . . Cre09g1056 . . Chy01g01058 Cme01g00995
Vvi19g583 Blo03g00538 . Bda07g00381 Bda09g00411 . Bpe08g01109 . . Cmo16g00959 . Cma01g01111 Cma09g00975 Car01g00980 Car09g00889 Sed07g2705 Cpe06g00787 Cpe02g00792 Bhi09g01700 Tan01g3132 Cmetu01g0482 . Hepe01g1245 Mch11g1220 . . . . . . . . Cone6ag0041 Cone9ag0047 Cone14ag1185 Cone15ag1202 Lsi02g01877 . . . . . Bda05g00693 . . Bpe03g00767 Bma07g01281 Bma14g00320 . Cmo01g01156 Cmo09g00974 . Cma16g00924 . Car16g00895 Cpe14g00748 . . . . . . . . Cla09g01036 Cam09g1092 Cec09g1092 Cco09g1113 . . Cre09g1057 . . Chy01g01059 Cme01g00994
   
Previous Page 2303 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
5 55214811 55216467 + Bda021828.1 Bda05g00693 693
5 55229170 55232496 - Bda021832.2 Bda05g00695 695
7 4774191 4780052 + Bda033838 Bda07g00378 378
7 4785101 4787406 - Bda025464.1 Bda07g00379 379
7 4799217 4806101 - Bda025465.1 Bda07g00380 380
7 4808229 4809673 + Bda025466.1 Bda07g00381 381
9 5092430 5095082 + Bda034093 Bda09g00408 408
9 5105731 5109400 - Bda030988.1 Bda09g00410 410
9 5111043 5112781 + Bda030989.1 Bda09g00411 411
12 40455596 40463826 + Bda009480.1 Bda12g00935 935
12 40465029 40468920 + Bda009481.1 Bda12g00936 936
12 40469950 40474116 - Bda009482.1 Bda12g00937 937
9 45527019 45532156 - XM_039041350.1 Bhi09g01696 1696
9 45621275 45626612 - XM_039042800.1 Bhi09g01698 1698
9 45627904 45634901 - XM_039043814.1 Bhi09g01699 1699
9 45678401 45680951 + XM_039040938.1 Bhi09g01700 1700
11 12918755 12929977 - XM_039048837.1 Bhi11g00572 572
11 12934803 12944221 - XM_039049466.1 Bhi11g00573 573
11 12987612 12993411 - XM_039049697.1 Bhi11g00574 574
3 20802549 20813170 - BLOR11719 Blo03g00538 538
3 20873567 20877787 + BLOR11720 Blo03g00539 539
3 20965778 20967976 + BLOR11721 Blo03g00540 540
3 41206103 41208849 + BLOR12640 Blo03g01459 1459
3 41218943 41228358 - BLOR12642 Blo03g01461 1461
7 27547453 27553674 - BLOR18814 Blo07g00882 882
7 27557607 27569656 - BLOR18815 Blo07g00883 883
10 26985119 26989109 + BLOR02639 Blo10g00849 849
10 26991007 26994813 + BLOR02640 Blo10g00850 850
10 27000302 27000859 - BLOR02641 Blo10g00851 851
7 48477958 48479680 - Bma026553.1 Bma07g01281 1281
7 48481643 48485322 + Bma026554.1 Bma07g01282 1282
7 48487123 48490998 + Bma026555.1 Bma07g01283 1283
7 48497526 48499985 - Bma026557.1 Bma07g01285 1285
10 7145379 7148419 + Bma004284.1 Bma10g00579 579
13 43823391 43832438 + Bma010211.1 Bma13g01085 1085
13 43859755 43869011 + Bma010217.1 Bma13g01091 1091
13 43870146 43875408 + Bma010218.1 Bma13g01092 1092
14 3997555 3999385 - Bma010744.1 Bma14g00320 320
14 4003028 4010268 + Bma030654 Bma14g00321 321
14 4029568 4032016 + Bma030655 Bma14g00322 322
14 4039115 4044732 - Bma030656 Bma14g00324 324
3 27690393 27691924 + Bpe012677.1 Bpe03g00767 767
3 27718417 27721333 - Bpe012681.2 Bpe03g00771 771
8 13125614 13127320 - Bpe023236.1 Bpe08g01109 1109
8 13128867 13132545 + Bpe026165 Bpe08g01110 1110
8 13133849 13137762 + Bpe023237.1 Bpe08g01111 1111
8 13142551 13145214 - Bpe023239.1 Bpe08g01113 1113
9 1017606 1021729 + Bpe023822.1 Bpe09g00149 149
9 1022890 1026793 - Bpe023823.1 Bpe09g00150 150
9 1027957 1036224 - Bpe023824.1 Bpe09g00151 151
9 11306440 11311261 - CaPI482276_09g010890.1 Cam09g1089 1089
9 11334946 11342144 - CaPI482276_09g010910.1 Cam09g1091 1091
9 11346987 11349614 + CaPI482276_09g010920.1 Cam09g1092 1092
10 7002528 7012672 - CaPI482276_10g004570.1 Cam10g0457 457
10 7018217 7026203 - CaPI482276_10g004590.1 Cam10g0459 459
10 7027521 7032950 - CaPI482276_10g004600.1 Cam10g0460 460
1 9324160 9327261 - Carg22382-RA Car01g00980 980
1 9328367 9335932 + Carg22381-RA Car01g00981 981
1 9336665 9342566 + Carg22380-RA Car01g00982 982
1 9348409 9350853 + Carg22379-RA Car01g00983 983
9 5431715 5434458 - Carg12839-RA Car09g00885 885
9 5445746 5447576 - Carg12840-RA Car09g00886 886
9 5451524 5457504 - Carg12842-RA Car09g00888 888
9 5458639 5462156 + Carg12843-RA Car09g00889 889
16 6940857 6946819 + Carg26941-RA Car16g00886 886
16 6949954 6958649 + Carg26940-RA Car16g00887 887
16 6962751 6973166 + Carg26939-RA Car16g00888 888
16 7125309 7126953 - Carg22360-RA Car16g00895 895
9 10639685 10644566 - CcPI632755_09g011090.1 Cco09g1109 1109
9 10668629 10675596 - CcPI632755_09g011110.1 Cco09g1111 1111
9 10680226 10682108 + CcPI632755_09g011130.1 Cco09g1113 1113
10 5563934 5573998 - CcPI632755_10g004660.1 Cco10g0466 466
10 5579481 5587489 - CcPI632755_10g004680.1 Cco10g0468 468
10 5588938 5592858 - CcPI632755_10g004690.1 Cco10g0469 469
9 10670543 10675375 - CePI673135_09g010880.1 Cec09g1088 1088
9 10700473 10707585 - CePI673135_09g010900.1 Cec09g1090 1090
9 10713118 10714934 + CePI673135_09g010920.1 Cec09g1092 1092
10 5769627 5779632 - CePI673135_10g004790.1 Cec10g0479 479
10 5782816 5784126 - CePI673135_10g004800.1 Cec10g0480 480
10 5784225 5797706 - CePI673135_10g004810.1 Cec10g0481 481
1 11716848 11720405 - Chy1G010560.1 Chy01g01056 1056
1 11751162 11762396 - Chy1G010570.1 Chy01g01057 1057
1 11764691 11771625 - Chy1G010580.1 Chy01g01058 1058
1 11777833 11779421 + Chy1G010590.1 Chy01g01059 1059
6 22229237 22233324 + Chy6G123760.1 Chy06g01848 1848
6 22239283 22247999 + Chy6G123770.1 Chy06g01849 1849
6 22250440 22257051 + Chy6G123780.1 Chy06g01850 1850
10 5833330 5843409 - ClG42_10g0047700.10 Clacu10g0477 477
10 5852044 5861405 - ClG42_10g0047800.10 Clacu10g0478 478
10 5862860 5866833 - ClG42_10g0047900.10 Clacu10g0479 479
9 10914868 10920196 - ClCG09G011080.1 Cla09g01034 1034
9 10937567 10951636 - ClCG09G011090.2 Cla09g01035 1035
9 10956463 10959268 + ClCG09G011110.2 Cla09g01036 1036
10 6213591 6224171 - ClCG10G005040.1 Cla10g00470 470
10 6225493 6241631 - ClCG10G005050.2 Cla10g00471 471
10 6242811 6248453 - ClCG10G005060.2 Cla10g00472 472
1 8131197 8134403 - CmaCh01G011110.1 Cma01g01111 1111
1 8140654 8146431 + CmaCh01G011130.1 Cma01g01113 1113
1 8152186 8155169 + CmaCh01G011140.1 Cma01g01114 1114
9 4918603 4922066 - CmaCh09G009710.1 Cma09g00971 971
9 4934171 4940439 - CmaCh09G009730.1 Cma09g00973 973
9 4940714 4946580 - CmaCh09G009740.1 Cma09g00974 974
9 4947413 4950747 + CmaCh09G009750.1 Cma09g00975 975
16 6855371 6860731 + CmaCh16G009130.1 Cma16g00913 913
16 6867097 6876408 + CmaCh16G009140.1 Cma16g00914 914
16 6881544 6894516 + CmaCh16G009150.1 Cma16g00915 915
16 7034135 7036888 - CmaCh16G009240.1 Cma16g00924 924
1 11894476 11896876 - MELO3C013123.2.1 Cme01g00994 994
1 11902369 11910108 + MELO3C013124.2.1 Cme01g00995 995
1 11912241 11922510 + MELO3C013125.2.1 Cme01g00996 996
1 11944947 11948913 + MELO3C013127.2.1 Cme01g00997 997
6 35801244 35806869 - MELO3C014171.2.1 Cme06g02834 2834
6 35808908 35817817 - MELO3C014172.2.1 Cme06g02835 2835
6 35820572 35826443 - MELO3C014173.2.1 Cme06g02836 2836
1 11716225 11718577 + PI0000788.1 Cmetu01g0482 482
1 11670511 11674910 - PI0014642.1 Cmetu01g0770 770
1 11693069 11699475 - PI0007038.1 Cmetu01g0909 909
6 26575192 26582117 + PI0020827.2 Cmetu06g0787 787
6 26565391 26573212 + PI0028235.1 Cmetu06g1656 1656
6 26558838 26562862 + PI0026386.1 Cmetu06g2464 2464
10 17024492 17031834 - PI0026682.1 Cmetu10g1344 1344
1 9455895 9458933 - CmoCh01G011560.1 Cmo01g01156 1156
1 9460145 9465420 + CmoCh01G011570.1 Cmo01g01157 1157
1 9465789 9471753 + CmoCh01G011580.1 Cmo01g01158 1158
1 9479273 9481793 + CmoCh01G011590.1 Cmo01g01159 1159
6 5211609 5218241 - CmoCh06G008900.1 Cmo06g00890 890
6 5221255 5226769 - CmoCh06G008910.1 Cmo06g00891 891
9 5130084 5133215 - CmoCh09G009710.1 Cmo09g00971 971
9 5145178 5149627 - CmoCh09G009720.1 Cmo09g00972 972
9 5150913 5157153 - CmoCh09G009730.1 Cmo09g00973 973
9 5158698 5162529 + CmoCh09G009740.1 Cmo09g00974 974
16 6169335 6175228 + CmoCh16G009480.1 Cmo16g00948 948
16 6179070 6187588 + CmoCh16G009490.1 Cmo16g00949 949
16 6191990 6202619 + CmoCh16G009500.1 Cmo16g00950 950
16 6354364 6357619 - CmoCh16G009590.1 Cmo16g00959 959
10 5962671 5972750 - CmPI595203_10g013060.1 Cmu10g1306 1306
10 5977015 5984968 - CmPI595203_10g013070.1 Cmu10g1307 1307
10 5986423 5991733 - CmPI595203_10g013080.1 Cmu10g1308 1308
6 250828 252855 - Conep06aG0004100.1 Cone6ag0041 41
6 252957 256055 + Conep06aG0004200.1 Cone6ag0042 42
6 259350 261981 + Conep06aG0004300.1 Cone6ag0043 43
9 243349 245257 - Conep09aG0004700.1 Cone9ag0047 47
9 245465 248369 + Conep09aG0004800.1 Cone9ag0048 48
9 248919 251123 + Conep09aG0004900.1 Cone9ag0049 49
9 253437 256519 + Conep09aG0005000.1 Cone9ag0050 50
9 258253 262152 - Conep09aG0005100.1 Cone9ag0051 51
14 9654796 9658531 + Conep14aG0120400.1 Cone14ag1180 1180
14 9666821 9670238 + Conep14aG0120500.1 Cone14ag1181 1181
14 9670525 9675154 - Conep14aG0120600.1 Cone14ag1182 1182
14 9681715 9684267 - Conep14aG0120900.1 Cone14ag1185 1185
15 9565502 9569208 + Conep15aG0122400.1 Cone15ag1195 1195
15 9573345 9576313 + Conep15aG0122700.1 Cone15ag1198 1198
15 9576792 9581834 - Conep15aG0122800.1 Cone15ag1199 1199
15 9586818 9589479 - Conep15aG0123100.1 Cone15ag1202 1202
2 5049608 5052554 - Cp4.1LG02g00730.1 Cpe02g00790 790
2 5058959 5070887 - Cp4.1LG02g00780.1 Cpe02g00791 791
2 5071070 5074399 + Cp4.1LG02g00800.1 Cpe02g00792 792
6 4977542 4980674 - Cp4.1LG06g08700.1 Cpe06g00785 785
6 4992943 5007392 - Cp4.1LG06g08730.1 Cpe06g00786 786
6 5008423 5011943 + Cp4.1LG06g08640.1 Cpe06g00787 787
14 5545849 5551331 + Cp4.1LG14g07370.1 Cpe14g00738 738
14 5555057 5564345 + Cp4.1LG14g07390.1 Cpe14g00739 739
14 5568448 5579844 + Cp4.1LG14g07380.1 Cpe14g00740 740
14 5704118 5706363 - Cp4.1LG14g07520.1 Cpe14g00748 748
9 10849262 10854192 - CrPI670011_09g010540.1 Cre09g1054 1054
9 10878358 10885420 - CrPI670011_09g010560.1 Cre09g1056 1056
9 10890142 10892713 + CrPI670011_09g010570.1 Cre09g1057 1057
10 6856904 6866885 - CrPI670011_10g007110.1 Cre10g0711 711
10 6872448 6880488 - CrPI670011_10g007120.1 Cre10g0712 712
10 6881959 6885929 - CrPI670011_10g007130.1 Cre10g0713 713
3 3989330 3996697 - CsaV3_3G004720.1 Csa03g00472 472
3 3998515 4004191 - CsaV3_3G004730.1 Csa03g00473 473
3 4007706 4013811 - CsaV3_3G004740.1 Csa03g00474 474
7 9367816 9376560 - CsaV3_7G021010.1 Csa07g01012 1012
1 77705627 77708250 - Hsped.01g12450.1 Hepe01g1245 1245
1 77709382 77714881 + Hsped.01g12460.1 Hepe01g1246 1246
1 77716810 77722252 + Hsped.01g12470.1 Hepe01g1247 1247
1 77738142 77743230 + Hsped.01g12480.1 Hepe01g1248 1248
6 595016 600426 + Hsped.06g00220.1 Hepe06g0022 22
2 24587361 24589885 - Lsi02G018770.1 Lsi02g01877 1877
2 24607429 24615019 + Lsi02G018780.1 Lsi02g01878 1878
2 24616063 24621466 + Lsi02G018790.1 Lsi02g01879 1879
2 24638290 24643590 + Lsi02G018800.1 Lsi02g01880 1880
5 6949499 6960994 - Lsi05G005600.1 Lsi05g00560 560
5 6967252 6974854 - Lsi05G005610.1 Lsi05g00561 561
5 6981158 6986983 - Lsi05G005620.1 Lsi05g00562 562
10 11697015 11716507 - MC10g1082 Mch10g1340 1340
11 8604671 8608773 - MC11g1006 Mch11g1217 1217
11 8619924 8624841 - MC11g1007 Mch11g1218 1218
11 8628254 8634981 - MC11g1008 Mch11g1219 1219
11 8635703 8638399 + MC11g1009 Mch11g1220 1220
4 45878766 45884463 + Sed0016938.2 Sed04g3698 3698
4 45917514 45920306 + Sed0010838.1 Sed04g3702 3702
7 42305333 42310212 - Sed0008265.1 Sed07g2701 2701
7 42311331 42314326 + Sed0002435.4 Sed07g2705 2705
8 40301826 40320934 - Sed0002209.3 Sed08g2972 2972
8 40322097 40325802 - Sed0014032.2 Sed08g2974 2974
8 40331110 40345972 - Sed0026370.2 Sed08g2977 2977
1 18669711 18675416 + Tan0015143.2 Tan01g1748 1748
1 18676961 18685292 + Tan0017592.2 Tan01g1750 1750
1 18705423 18724075 + Tan0017655.1 Tan01g1753 1753
1 84150279 84155342 - Tan0019277.1 Tan01g3124 3124
1 84177888 84183126 - Tan0006444.2 Tan01g3126 3126
1 84186441 84194814 - Tan0015676.1 Tan01g3130 3130
1 84200538 84202994 + Tan0020155.1 Tan01g3132 3132
19 7255561 7268617 - Vvi19g574 Vvi19g574 574
19 7288187 7292433 + Vvi19g575 Vvi19g575 575
19 7292440 7293275 + Vvi19g576 Vvi19g576 576
19 7295392 7306698 + Vvi19g577 Vvi19g577 577
19 7308890 7311247 - Vvi19g578 Vvi19g578 578
19 7323008 7328503 - Vvi19g579 Vvi19g579 579
19 7328637 7339474 - Vvi19g580 Vvi19g580 580
19 7342463 7347760 - Vvi19g581 Vvi19g581 581
19 7349366 7366438 - Vvi19g582 Vvi19g582 582
19 7372208 7376801 + Vvi19g583 Vvi19g583 583
       

DecoBrowse