Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g531 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0725 Cone19ag0724 . . . . Chy10g00211 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01122 . .
Vvi1g532 . . Bda01g01787 Bda11g00197 Bpe13g00997 . . . . Cmo18g00627 . . . . . . Cpe01g01857 . . . . . . . . . . . . . . . . . . . Csa05g01967 . . . . . Bda11g00197 . Bpe02g01964 Bma01g00495 Bma06g01141 . Cmo04g02234 Cmo15g00927 Cma04g02141 Cma15g00889 Car04g02076 Car15g00835 Cpe13g00428 . Bhi12g00963 . . . . . Lcy10g1596 Cla01g00653 . . . . . . Lsi09g00707 . Chy09g00467 .
Vvi1g533 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g534 . . . . . . Bma14g01923 . . . . . . . Sed04g0545 . Cpe01g01858 Bhi07g01847 Tan04g0120 Cmetu10g0423 . Hepe10g1556 . . . . . . . . . . . Cone6ag0342 Cone9ag0376 Lsi04g00640 Csa05g01966 . Cme10g00626 . Blo11g00965 . . . . . . . Cmo04g02235 Cmo15g00925 Cma04g02142 Cma15g00887 Car04g02077 Car15g00833 Cpe13g00429 . Bhi12g00965 . . . . . . Cla01g00654 Cam01g0683 Cec01g0676 Cco01g0703 Clacu01g0671 Cmu01g0644 Cre09g1861 Lsi09g00708 Csa05g00994 . Cme09g01302
Vvi1g535 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g536 . . . . . Bpe10g01008 Bma14g01925 Bma15g00021 . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0340 Cone9ag0374 . Csa05g01962 . . Blo06g01035 . Bda07g01736 . . . . . . . . Cma04g01801 . . . . . . . . . . . . . . . . . . . . . . Cme09g01299
Vvi1g537 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo11g00963 . . . . . . . Cmo04g02238 Cmo15g00924 Cma04g02146 Cma15g00885 Car04g02079 Car15g00832 Cpe13g00430 . Bhi12g00970 . . . . . Lcy10g1592 Cla01g00657 Cam01g0687 Cec01g0679 Cco01g0707 Clacu01g0676 Cmu01g0650 Cre09g1857 Lsi09g00710 . . .
Vvi1g538 Blo01g00777 . Bda01g01786 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe02g01963 Bma01g00496 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g539 . . . Bda11g00198 . . . . . . . . . . . . Cpe01g01859 . . . . . . . . . . . . . . Cone13ag0724 . Cone6ag0339 Cone9ag0373 . Csa05g01961 . . . . . Bda11g00198 . . . . . Cmo04g02239 . Cma04g02147 . Car04g02080 . . . Bhi12g00971 . . . . . Lcy10g1591 Cla01g00658 Cam01g0688 Cec01g0680 Cco01g0708 Clacu01g0677 Cmu01g0651 Cre09g1856 Lsi09g00711 . . Cme09g01298
Vvi1g540 . Blo16g01197 . Bda11g01301 . . . . . . . Cma04g00038 . Car04g00044 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01301 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 54 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
1 54061104 54062635 + Bda004074.1 Bda01g01786 1786
1 54063441 54066312 + Bda004075.1 Bda01g01787 1787
7 32516644 32519560 - Bda028644.1 Bda07g01736 1736
11 2518241 2524844 - Bda004916.1 Bda11g00197 197
11 2527050 2528884 - Bda004917.1 Bda11g00198 198
11 13752855 13759243 - Bda033146 Bda11g01301 1301
7 50273824 50279440 - XM_039036213.1 Bhi07g01847 1847
12 29287156 29290909 - XM_039018437.1 Bhi12g00963 963
12 29341121 29348133 - XM_039018690.1 Bhi12g00965 965
12 29460368 29464428 + XM_039051279.1 Bhi12g00970 970
12 29464936 29466495 - XM_039051280.1 Bhi12g00971 971
1 11252459 11253421 - BLOR00777 Blo01g00777 777
6 33666253 33674959 + BLOR17618 Blo06g01035 1035
11 21537614 21540547 + BLOR03839 Blo11g00963 963
11 21758860 21764616 + BLOR03841 Blo11g00965 965
16 40478405 40484483 - BLOR21984 Blo16g01197 1197
1 4057983 4060797 - Bma000672.1 Bma01g00495 495
1 4061480 4062566 - Bma000673.2 Bma01g00496 496
6 48311782 48318169 - Bma024238.1 Bma06g01141 1141
14 41020093 41025734 - Bma012713.1 Bma14g01923 1923
14 41062146 41064968 + Bma012715.2 Bma14g01925 1925
15 259799 261346 - Bma012990.1 Bma15g00021 21
2 21509419 21510936 + Bpe009786.1 Bpe02g01963 1963
2 21512273 21514694 + Bpe009787.1 Bpe02g01964 1964
10 15520303 15523353 + Bpe003313.1 Bpe10g01008 1008
13 15717302 15723865 + Bpe025260 Bpe13g00997 997
1 7571827 7578181 - CaPI482276_01g006830.1 Cam01g0683 683
1 7638662 7642379 + CaPI482276_01g006870.1 Cam01g0687 687
1 7643405 7644688 - CaPI482276_01g006880.1 Cam01g0688 688
4 239928 240829 + Carg21992-RA Car04g00044 44
4 16915951 16918937 - Carg25250-RA Car04g02076 2076
4 16922796 16930709 - Carg25251-RA Car04g02077 2077
4 16945674 16950228 + Carg25253-RA Car04g02079 2079
4 16950821 16951729 - Carg25254-RA Car04g02080 2080
15 4759897 4763090 - Carg01323-RA Car15g00832 832
15 4772091 4778175 + Carg01322-RA Car15g00833 833
15 4783375 4787033 + Carg01320-RA Car15g00835 835
1 7357528 7363857 - CcPI632755_01g007030.1 Cco01g0703 703
1 7424002 7427709 + CcPI632755_01g007070.1 Cco01g0707 707
1 7428681 7429954 - CcPI632755_01g007080.1 Cco01g0708 708
1 7406921 7414673 - CePI673135_01g006760.1 Cec01g0676 676
1 7481242 7484954 + CePI673135_01g006790.1 Cec01g0679 679
1 7485973 7487273 - CePI673135_01g006800.1 Cec01g0680 680
9 4195316 4198647 - Chy9G161830.1 Chy09g00467 467
10 5384153 5385633 + Chy10G174050.1 Chy10g00211 211
1 7221363 7227722 - ClG42_01g0067100.10 Clacu01g0671 671
1 7316171 7319880 + ClG42_01g0067600.10 Clacu01g0676 676
1 7320821 7322058 - ClG42_01g0067700.10 Clacu01g0677 677
1 7594190 7597963 - ClCG01G006700.1 Cla01g00653 653
1 7622763 7630534 - ClCG01G006710.2 Cla01g00654 654
1 7701052 7705055 + ClCG01G006740.1 Cla01g00657 657
1 7705590 7707261 - ClCG01G006750.2 Cla01g00658 658
4 212345 213243 + CmaCh04G000380.1 Cma04g00038 38
4 9082342 9086935 - CmaCh04G018010.1 Cma04g01801 1801
4 14977224 14980882 - CmaCh04G021410.1 Cma04g02141 2141
4 14984183 14992051 - CmaCh04G021420.1 Cma04g02142 2142
4 15007461 15012126 + CmaCh04G021460.1 Cma04g02146 2146
4 15012724 15013927 - CmaCh04G021470.1 Cma04g02147 2147
15 4506333 4510331 - CmaCh15G008850.1 Cma15g00885 885
15 4518099 4523215 + CmaCh15G008870.1 Cma15g00887 887
15 4526845 4530821 + CmaCh15G008890.1 Cma15g00889 889
9 17985551 17988845 + MELO3C005246.2.1 Cme09g01298 1298
9 17989263 17993504 - MELO3C005247.2.1 Cme09g01299 1299
9 18034455 18042520 + MELO3C005250.2.1 Cme09g01302 1302
10 3991631 3993507 + MELO3C011900.2.1 Cme10g00626 626
10 17993725 17998756 + PI0000533.1 Cmetu10g0423 423
4 16709351 16713096 - CmoCh04G022340.1 Cmo04g02234 2234
4 16716157 16724204 - CmoCh04G022350.1 Cmo04g02235 2235
4 16741707 16746067 + CmoCh04G022380.1 Cmo04g02238 2238
4 16746404 16747537 - CmoCh04G022390.1 Cmo04g02239 2239
15 4694706 4698810 - CmoCh15G009240.1 Cmo15g00924 924
15 4707929 4714450 + CmoCh15G009250.1 Cmo15g00925 925
15 4719164 4723338 + CmoCh15G009270.1 Cmo15g00927 927
18 8011555 8015739 - CmoCh18G006270.1 Cmo18g00627 627
1 7191257 7197616 - CmPI595203_01g006440.1 Cmu01g0644 644
1 7285399 7289108 + CmPI595203_01g006500.1 Cmu01g0650 650
1 7290063 7291300 - CmPI595203_01g006510.1 Cmu01g0651 651
6 1606728 1607956 - Conep06aG0034500.1 Cone6ag0339 339
6 1608326 1612492 - Conep06aG0034600.1 Cone6ag0340 340
6 1622438 1628361 + Conep06aG0034800.1 Cone6ag0342 342
9 1672791 1674047 - Conep09aG0038100.1 Cone9ag0373 373
9 1674480 1678754 - Conep09aG0038200.1 Cone9ag0374 374
9 1690632 1695891 + Conep09aG0038400.1 Cone9ag0376 376
13 6993565 6994589 - Conep13aG0074800.1 Cone13ag0724 724
13 6997965 6999284 + Conep13aG0074900.1 Cone13ag0725 725
19 5987822 5989365 + Conep19aG0074500.1 Cone19ag0724 724
1 15842895 15846051 - Cp4.1LG01g18570.1 Cpe01g01857 1857
1 15849312 15857529 - Cp4.1LG01g18560.1 Cpe01g01858 1858
1 15921380 15921927 - Cp4.1LG01g18650.1 Cpe01g01859 1859
13 4612613 4615670 - Cp4.1LG13g06560.1 Cpe13g00428 428
13 4620451 4627573 - Cp4.1LG13g06550.1 Cpe13g00429 429
13 4636091 4640237 + Cp4.1LG13g06570.1 Cpe13g00430 430
9 37043164 37044437 + CrPI670011_09g018560.1 Cre09g1856 1856
9 37045415 37049124 - CrPI670011_09g018570.1 Cre09g1857 1857
9 37119572 37125906 + CrPI670011_09g018610.1 Cre09g1861 1861
5 9280299 9289384 - CsaV3_5G013000.1 Csa05g00994 994
5 11451621 11453322 + CsaV3_5G014460.1 Csa05g01122 1122
5 22992737 22994487 + CsaV3_5G027800.1 Csa05g01961 1961
5 22994625 22999350 - CsaV3_5G027810.1 Csa05g01962 1962
5 23031938 23038293 + CsaV3_5G027850.1 Csa05g01966 1966
5 23053261 23057274 + CsaV3_5G027860.1 Csa05g01967 1967
10 52291260 52296657 + Hsped.10g15560.1 Hepe10g1556 1556
10 40319886 40326866 + Maker00039688 Lcy10g1591 1591
10 40322577 40326532 - Maker00039380 Lcy10g1592 1592
10 40393471 40394483 + Maker00039568 Lcy10g1596 1596
4 5869847 5885985 - Lsi04G006400.1 Lsi04g00640 640
9 8025244 8028677 - Lsi09G007070.1 Lsi09g00707 707
9 8040783 8049050 - Lsi09G007080.1 Lsi09g00708 708
9 8097008 8101524 + Lsi09G007100.1 Lsi09g00710 710
9 8102080 8103806 - Lsi09G007110.1 Lsi09g00711 711
4 4039284 4046755 + Sed0010682.1 Sed04g0545 545
4 769086 773843 + Tan0012452.1 Tan04g0120 120
1 5940757 5942086 - Vvi1g531 Vvi1g531 531
1 5948428 5953185 - Vvi1g532 Vvi1g532 532
1 5978563 5979374 - Vvi1g533 Vvi1g533 533
1 5989545 5998606 - Vvi1g534 Vvi1g534 534
1 6009187 6010229 + Vvi1g535 Vvi1g535 535
1 6017203 6018710 + Vvi1g536 Vvi1g536 536
1 6018855 6024162 + Vvi1g537 Vvi1g537 537
1 6024538 6025674 - Vvi1g538 Vvi1g538 538
1 6028423 6029565 - Vvi1g539 Vvi1g539 539
1 6034339 6035646 - Vvi1g540 Vvi1g540 540
       

DecoBrowse