Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g856 . . . . . . . . . Cmo18g00169 . Cma11g00063 . . . . . Bhi02g00595 . . . . . . . . . . . . . . . . Cone19ag0174 Lsi02g00430 Csa01g00908 Chy12g01221 Cme12g01644 Blo13g00162 . . . . . . . . . Cmo11g00066 . . . . . . Bhi08g01677 . . . . . . . . . . . . . . . . .
Vvi17g857 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g858 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g859 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g860 . . Bda06g00622 . . . . Bma12g01059 . . Cma10g00088 . Car10g00078 . . . . Bhi02g00594 . . . . . . Cla06g01706 Cam06g1894 Cec06g1943 Cco06g1947 Clacu06g1850 Cmu06g1791 Cre06g2606 . Cone16ag0063 . . . . . . . . . . . . . . . Cmo10g00089 . . . . . . Cpe18g00873 . . . . . . . . . . . . . . Lsi06g01599 Csa01g00099 Chy02g02624 Cme02g02022
Vvi17g861 . . Bda06g00623 Bda15g00532 . . . Bma12g01061 . Cmo18g00175 . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0183 . Lsi02g00436 Csa01g00909 Chy12g01217 Cme12g01643 Blo13g00154 Blo15g00245 . . . . . . . . . . . . . . . Bhi08g01683 . . . Hepe07g2179 . . Cla03g00302 . . . . . . . . . .
Vvi17g862 . . . . . . . . . . Cma10g00087 . Car10g00077 Car11g00057 . . Cpe04g01589 Bhi02g00592 . . . Hepe09g0092 . . Cla06g01707 Cam06g1895 Cec06g1944 Cco06g1948 Clacu06g1851 Cmu06g1792 Cre06g2607 . . Cone13ag0185 Cone19ag0178 . . . . . . . . . . . . . Cmo10g00088 . . . . . . . . . . . . . . . . . . . . . Lsi06g01600 Csa01g00097 Chy02g02625 Cme02g02023
Vvi17g863 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g864 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g865 . . . . . . . . . . Cma10g00084 . Car10g00076 . Sed12g2486 . . Bhi02g00589 Tan09g2318 Cmetu02g1514 . Hepe09g0090 . . . . . . . . . . . Cone13ag0187 . . . . . . . . . . . . . . Cmo10g00086 . . . . . . Cpe18g00876 . . . . . . . . . . . . . . Lsi06g01602 Csa01g00095 . Cme02g02025
   
Previous Page 2051 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
6 8524701 8527386 + Bda023893.1 Bda06g00622 622
6 8528232 8529663 + Bda023894.1 Bda06g00623 623
15 8354957 8356407 - Bda012363.1 Bda15g00532 532
2 11033720 11038610 - XM_039022422.1 Bhi02g00589 589
2 11070689 11074348 - XM_039022500.1 Bhi02g00592 592
2 11089458 11093318 + XM_039024084.1 Bhi02g00594 594
2 11210680 11213309 - XM_039024629.1 Bhi02g00595 595
8 47226428 47229331 - XM_039039780.1 Bhi08g01677 1677
8 47401911 47403980 + XM_039039254.1 Bhi08g01683 1683
13 5140384 5142109 + BLOR05435 Blo13g00154 154
13 5616985 5617761 + BLOR05443 Blo13g00162 162
15 2546948 2553408 - BLOR06639 Blo15g00245 245
12 42706912 42709159 + Bma008408.1 Bma12g01059 1059
12 42800238 42801806 + Bma008410.2 Bma12g01061 1061
6 29956444 29959752 - CaPI482276_06g018940.1 Cam06g1894 1894
6 29965598 29968446 + CaPI482276_06g018950.1 Cam06g1895 1895
10 338536 342600 - Carg10308-RA Car10g00076 76
10 343517 347828 - Carg10309-RA Car10g00077 77
10 351645 355101 + Carg10310-RA Car10g00078 78
11 314450 319062 - Carg20195-RA Car11g00057 57
6 29691193 29696174 - CcPI632755_06g019470.1 Cco06g1947 1947
6 29701420 29704258 + CcPI632755_06g019480.1 Cco06g1948 1948
6 32764911 32768220 - CePI673135_06g019430.1 Cec06g1943 1943
6 32773023 32776588 + CePI673135_06g019440.1 Cec06g1944 1944
2 29365893 29373634 - Chy2G048910.1 Chy02g02624 2624
2 29377124 29379512 + Chy2G048920.1 Chy02g02625 2625
12 16915450 16917604 + Chy12G218170.1 Chy12g01217 1217
12 16937742 16939542 + Chy12G218210.1 Chy12g01221 1221
6 29007292 29010600 - ClG42_06g0185000.10 Clacu06g1850 1850
6 29015716 29019285 + ClG42_06g0185100.10 Clacu06g1851 1851
3 3686486 3689400 + ClCG03G003180.1 Cla03g00302 302
6 30633629 30637409 - ClCG06G017470.2 Cla06g01706 1706
6 30642404 30646076 + ClCG06G017480.2 Cla06g01707 1707
10 348534 353203 - CmaCh10G000840.1 Cma10g00084 84
10 356190 359937 - CmaCh10G000870.1 Cma10g00087 87
10 361846 366687 + CmaCh10G000880.1 Cma10g00088 88
11 322087 324549 - CmaCh11G000630.1 Cma11g00063 63
2 26371066 26374713 - MELO3C026250.2.1 Cme02g02022 2022
2 26377726 26381079 + MELO3C026249.2.1 Cme02g02023 2023
2 26385526 26390166 + MELO3C026247.2.1 Cme02g02025 2025
12 23555906 23557533 - MELO3C035538.2.1 Cme12g01643 1643
12 23559875 23561824 - MELO3C002314.2.1 Cme12g01644 1644
2 24683711 24688267 + PI0012828.1 Cmetu02g1514 1514
10 382156 386489 - CmoCh10G000860.1 Cmo10g00086 86
10 389396 394206 - CmoCh10G000880.1 Cmo10g00088 88
10 395692 399768 + CmoCh10G000890.1 Cmo10g00089 89
11 310428 315744 - CmoCh11G000660.1 Cmo11g00066 66
18 1173597 1175800 - CmoCh18G001690.1 Cmo18g00169 169
18 1203362 1206712 - CmoCh18G001750.1 Cmo18g00175 175
6 28911555 28914861 - CmPI595203_06g017910.1 Cmu06g1791 1791
6 28920012 28923684 + CmPI595203_06g017920.1 Cmu06g1792 1792
13 1136459 1138370 + Conep13aG0018800.1 Cone13ag0183 183
13 1149657 1153558 + Conep13aG0019000.1 Cone13ag0185 185
13 1157328 1163892 + Conep13aG0019200.1 Cone13ag0187 187
16 326417 328613 - Conep16aG0006400.1 Cone16ag0063 63
19 1011523 1048475 - Conep19aG0018000.1 Cone19ag0174 174
19 1134351 1138387 + Conep19aG0018400.1 Cone19ag0178 178
4 12386492 12391104 + Cp4.1LG04g15920.1 Cpe04g01589 1589
18 7973448 7980961 - Cp4.1LG18g08760.1 Cpe18g00873 873
18 7989239 7993657 + Cp4.1LG18g08660.1 Cpe18g00876 876
6 33737690 33740998 - CrPI670011_06g026060.1 Cre06g2606 2606
6 33746887 33749739 + CrPI670011_06g026070.1 Cre06g2607 2607
1 561420 566394 - CsaV3_1G000950.1 Csa01g00095 95
1 571441 573110 - CsaV3_1G000970.1 Csa01g00097 97
1 576776 580721 + CsaV3_1G000990.1 Csa01g00099 99
1 5657105 5658974 + CsaV3_1G009080.1 Csa01g00908 908
1 5662884 5663953 + CsaV3_1G009090.1 Csa01g00909 909
7 66096518 66097513 + Hsped.07g21790.1 Hepe07g2179 2179
9 715687 720458 - Hsped.09g00900.1 Hepe09g0090 90
9 728417 732621 - Hsped.09g00920.1 Hepe09g0092 92
2 3558876 3563830 - Lsi02G004300.1 Lsi02g00430 430
2 3616233 3620751 - Lsi02G004360.1 Lsi02g00436 436
6 26373542 26383982 - Lsi06G015990.1 Lsi06g01599 1599
6 26387254 26390967 + Lsi06G016000.1 Lsi06g01600 1600
6 26398713 26404406 + Lsi06G016020.1 Lsi06g01602 1602
12 34421110 34426418 + Sed0021706.1 Sed12g2486 2486
9 73034971 73039202 + Tan0019805.2 Tan09g2318 2318
17 11284887 11287081 + Vvi17g856 Vvi17g856 856
17 11295634 11297606 - Vvi17g857 Vvi17g857 857
17 11321721 11322467 + Vvi17g858 Vvi17g858 858
17 11329649 11329799 + Vvi17g859 Vvi17g859 859
17 11352416 11359966 - Vvi17g860 Vvi17g860 860
17 11371145 11380581 + Vvi17g861 Vvi17g861 861
17 11401979 11406344 + Vvi17g862 Vvi17g862 862
17 11406396 11410361 + Vvi17g863 Vvi17g863 863
17 11411377 11418477 + Vvi17g864 Vvi17g864 864
17 11456924 11462413 + Vvi17g865 Vvi17g865 865
       

DecoBrowse