Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g80 . . . . . . . . . . . . . . . Cpe06g00015 . . . . . . . . . . . . . . . Cone4ag2026 . . . Lsi04g01817 Csa04g02714 . . . . . . . . . . . . Cmo09g00047 . . . Car09g00037 . . Bhi09g02856 . . . . . . . . . . . . . . . Chy07g00403 Cme07g00045
Vvi18g81 . Blo12g00850 . Bda03g00325 . Bpe04g00285 Bma04g00292 . . . . Cma09g00046 . . . Cpe06g00016 . . . . . . . . . . . . . . . Cone4ag2025 . . . Lsi04g01816 Csa04g02713 . . . . . . . . . . Sed13g2203 . Cmo09g00048 . . . Car09g00038 . . Bhi09g02869 Tan01g5121 Cmetu07g0880 . Hepe01g2348 Mch11g0049 . Cla11g01831 Cam11g1898 Cec11g1923 Cco11g1933 Clacu11g2062 Cmu11g1867 Cre11g2275 . . Chy07g00402 Cme07g00047
Vvi18g82 Blo01g01638 . . Bda03g00324 Bpe02g00305 . Bma04g00291 Bma01g02412 . . Cma01g02023 Cma09g00047 Car01g01590 . . Cpe06g00017 . . . . . . . . . . . . . . . . . . . Lsi04g01814 Csa04g02711 . . . . Bda11g00976 . . . . . Sed01g2425 Cmo01g02079 Cmo09g00049 . . . Car09g00039 . Cpe02g00030 Bhi09g02871 Tan01g5120 Cmetu07g0405 . Hepe01g2347 Mch11g0050 . Cla11g01830 Cam11g1897 Cec11g1922 Cco11g1932 Clacu11g2061 Cmu11g1866 Cre11g2274 . . Chy07g00400 Cme07g00048
Vvi18g83 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01813 . . . . . . . . . . . Sed01g2429 . . . . . . . . Bhi09g02872 Tan01g5118 Cmetu01g0555 . . Mch11g0051 . Cla11g01829 Cam11g1896 Cec11g1921 Cco11g1931 Clacu11g2060 Cmu11g1865 Cre11g2273 . . . .
Vvi18g84 . . . . . . . . . . . Cma09g00048 . . . Cpe06g00018 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo09g00051 . . . Car09g00040 . . . . . . . . . . . . . . . . . . . .
Vvi18g85 . Blo12g00851 . Bda03g00323 Bpe02g00306 Bpe04g00284 Bma04g00290 . . . Cma01g02021 Cma09g00049 Car01g01588 . . Cpe06g00019 . . . . . . . . . . . . . . . Cone4ag2024 Cone7ag1941 Cone17ag1458 . Lsi04g01812 Csa04g02709 . . . . Bda11g00975 . . . . . Sed01g2431 Cmo01g02078 Cmo09g00052 . . . Car09g00041 . . Bhi09g02874 Tan01g5116 Cmetu06g2583 . . Mch11g0052 . Cla11g01828 Cam11g1895 Cec11g1920 Cco11g1929 Clacu11g2059 Cmu11g1864 Cre11g2271 . . Chy07g00398 .
Vvi18g86 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g87 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo18g00744 . Bda01g01563 Bpe02g01757 . Bma01g00701 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g88 . . . Bda03g00322 . Bpe04g00283 Bma04g00289 . . . Cma01g02019 . Car01g01587 . . . . . . . . . . . . . . . . . . Cone4ag2023 Cone7ag1940 . . Lsi04g01811 Csa04g02708 . . . . . . . . . . Sed13g2199 Cmo01g02077 . . . . . . Cpe02g00031 Bhi09g02875 Tan01g5115 Cmetu07g1520 . Hepe01g2345 Mch11g0053 . Cla11g01827 Cam11g1894 Cec11g1919 Cco11g1927 Clacu11g2058 Cmu11g1863 Cre11g2270 . . Chy07g00397 Cme07g00050
Vvi18g89 . . . . . . . . Cmo05g00357 Cmo12g00620 . . . Car12g00661 . . Cpe07g00594 Bhi04g00092 . . . Hepe10g0189 . Lcy13g1876 Cla08g00938 Cam08g1385 Cec08g0966 Cco08g1088 Clacu08g1092 . Cre08g0875 . . Cone17ag1457 Cone20ag0020 . . . Cme03g01550 Blo17g00906 . . . . . . . . . . Cma12g00683 Cma05g00353 Car05g00298 . Cpe11g00783 . . . . . . . . . . . . . . . Lsi08g00780 . Chy03g01060 .
   
Previous Page 2074 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
1 51510684 51511913 + Bda003832.1 Bda01g01563 1563
3 2749994 2753837 - Bda016282.1 Bda03g00322 322
3 2754844 2756131 + Bda016283.1 Bda03g00323 323
3 2762501 2764027 + Bda016284.1 Bda03g00324 324
3 2765328 2774738 - Bda016285.1 Bda03g00325 325
11 9501991 9503089 + Bda005738.1 Bda11g00975 975
11 9505207 9506969 + Bda005739.1 Bda11g00976 976
4 2455704 2457103 + XM_039028889.1 Bhi04g00092 92
9 75574976 75582119 - XM_039043618.1 Bhi09g02856 2856
9 75594653 75624994 + XM_039041927.1 Bhi09g02869 2869
9 75625226 75627067 - XM_039041929.1 Bhi09g02871 2871
9 75656942 75671647 + XM_039040718.1 Bhi09g02872 2872
9 75681345 75682858 - XM_039040868.1 Bhi09g02874 2874
9 75710279 75714857 + XM_039044350.1 Bhi09g02875 2875
1 56208171 56210238 + BLOR01638 Blo01g01638 1638
12 26772882 26786204 + BLOR04869 Blo12g00850 850
12 26791293 26792500 - BLOR04870 Blo12g00851 851
17 29880745 29882532 + BLOR08452 Blo17g00906 906
18 20066936 20067553 - BLOR09232 Blo18g00744 744
1 6410415 6411647 - Bma000911.1 Bma01g00701 701
1 81704465 81706266 + Bma003284.1 Bma01g02412 2412
4 2327480 2331920 - Bma018743.1 Bma04g00289 289
4 2333172 2334366 + Bma018744.1 Bma04g00290 290
4 2338187 2339251 + Bma018745.1 Bma04g00291 291
4 2340673 2350066 - Bma018746.2 Bma04g00292 292
2 2008735 2010532 - Bpe008147.1 Bpe02g00305 305
2 2012615 2013497 - Bpe008148.1 Bpe02g00306 306
2 19906681 19907908 + Bpe009588.1 Bpe02g01757 1757
4 1813579 1817399 - Bpe014986.1 Bpe04g00283 283
4 1818371 1819323 + Bpe014987.1 Bpe04g00284 284
4 1823928 1833876 - Bpe014988.2 Bpe04g00285 285
8 20135584 20137293 - CaPI482276_08g013850.1 Cam08g1385 1385
11 31484078 31487986 - CaPI482276_11g018940.1 Cam11g1894 1894
11 31493104 31494464 + CaPI482276_11g018950.1 Cam11g1895 1895
11 31495682 31498087 - CaPI482276_11g018960.1 Cam11g1896 1896
11 31501734 31503120 + CaPI482276_11g018970.1 Cam11g1897 1897
11 31503129 31513862 - CaPI482276_11g018980.1 Cam11g1898 1898
1 13145250 13148689 - Carg21368-RA Car01g01587 1587
1 13148756 13150675 + Carg21367-RA Car01g01588 1588
1 13151809 13153546 + Carg21365-RA Car01g01590 1590
5 1648346 1659009 - Carg09361-RA Car05g00298 298
9 184890 187626 - Carg08620-RA Car09g00037 37
9 188010 198234 + Carg08621-RA Car09g00038 38
9 199267 200824 - Carg08622-RA Car09g00039 39
9 201750 203290 + Carg08623-RA Car09g00040 40
9 204260 205862 - Carg08624-RA Car09g00041 41
12 4477799 4479493 - Carg17641-RA Car12g00661 661
8 22650333 22652042 - CcPI632755_08g010880.1 Cco08g1088 1088
11 31952428 31956343 - CcPI632755_11g019270.1 Cco11g1927 1927
11 31965908 31967303 + CcPI632755_11g019290.1 Cco11g1929 1929
11 31969372 31970909 - CcPI632755_11g019310.1 Cco11g1931 1931
11 31974573 31975965 + CcPI632755_11g019320.1 Cco11g1932 1932
11 31975974 31986648 - CcPI632755_11g019330.1 Cco11g1933 1933
8 21488640 21490349 - CePI673135_08g009660.1 Cec08g0966 966
11 33404051 33407958 - CePI673135_11g019190.1 Cec11g1919 1919
11 33412828 33414197 + CePI673135_11g019200.1 Cec11g1920 1920
11 33415417 33417821 - CePI673135_11g019210.1 Cec11g1921 1921
11 33420753 33422147 + CePI673135_11g019220.1 Cec11g1922 1922
11 33422156 33432889 - CePI673135_11g019230.1 Cec11g1923 1923
3 14050081 14054816 + Chy3G060400.1 Chy03g01060 1060
7 3172632 3176645 - Chy7G132270.1 Chy07g00397 397
7 3177676 3178999 + Chy7G132280.1 Chy07g00398 398
7 3182409 3183736 + Chy7G132300.1 Chy07g00400 400
7 3195279 3202797 - Chy7G132320.1 Chy07g00402 402
7 3205255 3206973 + Chy7G132330.1 Chy07g00403 403
8 20908075 20909784 - ClG42_08g0109200.10 Clacu08g1092 1092
11 31523236 31527145 - ClG42_11g0205800.10 Clacu11g2058 2058
11 31530860 31532686 + ClG42_11g0205900.10 Clacu11g2059 2059
11 31533401 31536274 - ClG42_11g0206000.10 Clacu11g2060 2060
11 31539946 31541325 + ClG42_11g0206100.10 Clacu11g2061 2061
11 31541334 31552051 - ClG42_11g0206200.10 Clacu11g2062 2062
8 21911870 21913763 - ClCG08G009310.2 Cla08g00938 938
11 31931140 31935564 - ClCG11G018770.1 Cla11g01827 1827
11 31936968 31941090 + ClCG11G018780.2 Cla11g01828 1828
11 31941805 31944691 - ClCG11G018790.1 Cla11g01829 1829
11 31948250 31949956 + ClCG11G018800.1 Cla11g01830 1830
11 31950773 31960677 - ClCG11G018810.2 Cla11g01831 1831
1 12917873 12921102 - CmaCh01G020190.1 Cma01g02019 2019
1 12921761 12923111 + CmaCh01G020210.1 Cma01g02021 2021
1 12923752 12926089 + CmaCh01G020230.1 Cma01g02023 2023
5 1562008 1573009 - CmaCh05G003530.1 Cma05g00353 353
9 195163 205666 + CmaCh09G000460.1 Cma09g00046 46
9 205924 207820 - CmaCh09G000470.1 Cma09g00047 47
9 208464 210287 + CmaCh09G000480.1 Cma09g00048 48
9 211689 214846 - CmaCh09G000490.1 Cma09g00049 49
12 3701977 3703671 - CmaCh12G006830.1 Cma12g00683 683
3 24595657 24601062 + MELO3C011326.2.1 Cme03g01550 1550
7 280339 283652 - MELO3C017038.2.1 Cme07g00045 45
7 295461 304656 + MELO3C017033.2.1 Cme07g00047 47
7 304920 306466 - MELO3C017032.2.1 Cme07g00048 48
7 309866 313986 + MELO3C017030.2.1 Cme07g00050 50
1 1774317 1778064 - PI0028481.1 Cmetu01g0555 555
6 30705953 30708016 - PI0027833.2 Cmetu06g2583 2583
7 24487402 24489033 + PI0023820.1 Cmetu07g0405 405
7 24489896 24498534 - PI0020949.1 Cmetu07g0880 880
7 24477265 24481330 - PI0002941.1 Cmetu07g1520 1520
1 14463536 14466820 - CmoCh01G020770.1 Cmo01g02077 2077
1 14466836 14469532 + CmoCh01G020780.1 Cmo01g02078 2078
1 14469978 14479374 + CmoCh01G020790.1 Cmo01g02079 2079
5 1604991 1615982 - CmoCh05G003570.1 Cmo05g00357 357
9 195021 196748 - CmoCh09G000470.1 Cmo09g00047 47
9 197240 208772 + CmoCh09G000480.1 Cmo09g00048 48
9 208487 210344 - CmoCh09G000490.1 Cmo09g00049 49
9 210550 213064 + CmoCh09G000510.1 Cmo09g00051 51
9 214054 217452 - CmoCh09G000520.1 Cmo09g00052 52
12 3885391 3887085 - CmoCh12G006200.1 Cmo12g00620 620
11 30772812 30776721 - CmPI595203_11g018630.1 Cmu11g1863 1863
11 30780437 30782263 + CmPI595203_11g018640.1 Cmu11g1864 1864
11 30782978 30785851 - CmPI595203_11g018650.1 Cmu11g1865 1865
11 30789522 30790901 + CmPI595203_11g018660.1 Cmu11g1866 1866
11 30790910 30801627 - CmPI595203_11g018670.1 Cmu11g1867 1867
4 14063382 14067667 - Conep04aG0208800.1 Cone4ag2023 2023
4 14068094 14069893 + Conep04aG0208900.1 Cone4ag2024 2024
4 14069970 14078994 - Conep04aG0209000.1 Cone4ag2025 2025
4 14079141 14081795 + Conep04aG0209100.1 Cone4ag2026 2026
7 12381380 12385768 - Conep07aG0199800.1 Cone7ag1940 1940
7 12386493 12387757 + Conep07aG0199900.1 Cone7ag1941 1941
17 9890778 9892502 + Conep17aG0149800.1 Cone17ag1457 1457
17 9894432 9897438 + Conep17aG0149900.1 Cone17ag1458 1458
20 133512 134609 - Conep20aG0002000.1 Cone20ag0020 20
2 157492 161929 - Cp4.1LG02g08320.1 Cpe02g00030 30
2 162221 166103 + Cp4.1LG02g08390.1 Cpe02g00031 31
6 66155 69278 - Cp4.1LG06g00150.1 Cpe06g00015 15
6 69492 80194 + Cp4.1LG06g00060.1 Cpe06g00016 16
6 80276 82304 - Cp4.1LG06g00130.1 Cpe06g00017 17
6 82907 84867 + Cp4.1LG06g00040.1 Cpe06g00018 18
6 86182 91044 - Cp4.1LG06g00340.1 Cpe06g00019 19
7 3985152 3986846 - Cp4.1LG07g05760.1 Cpe07g00594 594
11 6344356 6346047 - Cp4.1LG11g07780.1 Cpe11g00783 783
8 21877241 21878950 - CrPI670011_08g008750.1 Cre08g0875 875
11 34456483 34460388 - CrPI670011_11g022700.1 Cre11g2270 2270
11 34465264 34466642 + CrPI670011_11g022710.1 Cre11g2271 2271
11 34467868 34473785 - CrPI670011_11g022730.1 Cre11g2273 2273
11 34473936 34475330 + CrPI670011_11g022740.1 Cre11g2274 2274
11 34475339 34486130 - CrPI670011_11g022750.1 Cre11g2275 2275
4 26182005 26186938 - CsaV3_4G037340.1 Csa04g02708 2708
4 26186113 26189578 + CsaV3_4G037350.1 Csa04g02709 2709
4 26192300 26193473 + CsaV3_4G037370.1 Csa04g02711 2711
4 26206185 26212926 - CsaV3_4G037390.1 Csa04g02713 2713
4 26214951 26218353 + CsaV3_4G037400.1 Csa04g02714 2714
1 87990182 87994784 - Hsped.01g23450.1 Hepe01g2345 2345
1 88001366 88003320 + Hsped.01g23470.1 Hepe01g2347 2347
1 88003566 88014868 - Hsped.01g23480.1 Hepe01g2348 2348
10 1892385 1894222 - Hsped.10g01890.1 Hepe10g0189 189
13 37674201 37675563 + Maker00034182 Lcy13g1876 1876
4 25337478 25341787 - Lsi04G018110.1 Lsi04g01811 1811
4 25344166 25347018 + Lsi04G018120.1 Lsi04g01812 1812
4 25347391 25351020 - Lsi04G018130.1 Lsi04g01813 1813
4 25353981 25355478 + Lsi04G018140.1 Lsi04g01814 1814
4 25355694 25366407 - Lsi04G018160.1 Lsi04g01816 1816
4 25370242 25371966 + Lsi04G018170.1 Lsi04g01817 1817
8 16186746 16188446 - Lsi08G007800.1 Lsi08g00780 780
11 313976 324265 + MC11g0044 Mch11g0049 49
11 324609 326853 - MC11g0045 Mch11g0050 50
11 327568 329586 + MC11g0046 Mch11g0051 51
11 330724 332386 - MC11g0047 Mch11g0052 52
11 333318 338172 + MC11g0048 Mch11g0053 53
1 18090858 18093565 - Sed0028050.3 Sed01g2425 2425
1 18112250 18118116 + Sed0001815.1 Sed01g2429 2429
1 18118741 18126840 - Sed0011497.2 Sed01g2431 2431
13 26504061 26508181 - Sed0017255.1 Sed13g2199 2199
13 26529407 26547739 - Sed0022111.1 Sed13g2203 2203
1 116504189 116508907 - Tan0016340.1 Tan01g5115 5115
1 116514144 116515502 + Tan0016818.1 Tan01g5116 5116
1 116523335 116525084 - Tan0004912.1 Tan01g5118 5118
1 116549047 116550550 + Tan0008213.1 Tan01g5120 5120
1 116550594 116580737 - Tan0015489.1 Tan01g5121 5121
18 764517 766414 - Vvi18g80 Vvi18g80 80
18 767917 780317 + Vvi18g81 Vvi18g81 81
18 780747 784482 - Vvi18g82 Vvi18g82 82
18 792130 803420 + Vvi18g83 Vvi18g83 83
18 803432 805930 + Vvi18g84 Vvi18g84 84
18 807454 809607 - Vvi18g85 Vvi18g85 85
18 813502 815618 + Vvi18g86 Vvi18g86 86
18 817582 819451 - Vvi18g87 Vvi18g87 87
18 821287 826998 + Vvi18g88 Vvi18g88 88
18 827871 829569 - Vvi18g89 Vvi18g89 89
       

DecoBrowse